0e337fe2015f13e4f47a3c413202872a *DESCRIPTION
31de62d1f797bcab8b5c8e91fddd9bd9 *NAMESPACE
3c3d28599f72151c31d5388f0a53efc2 *NEWS.md
2825ad914fa721f68ba6df8ebd850044 *R/CDSeq-package.R
745449cb114ea91f578b22a7dcb7bc61 *R/CDSeq.R
e9ce5f95d5d2ee86dab1e025eb3514f8 *R/Cell2RNA.R
66e3a62f86026ac5cc33ff21f7c61bbe *R/RNA2Cell.R
fe8bdfd1be0493f7ca5d20fe4e724e14 *R/RcppExports.R
abe9450fa761fef4fa6d840c93509cac *R/cdseq_result1-data.R
758010d0936d8c54d4b17583bd14faed *R/cdseq_result2-data.R
103241a66a97ad4ba61d044072788f56 *R/cdseq_result3-data.R
b7d917996a83ad9150d44a75a8304008 *R/cdseq_result_pbmcmix-data.R
0e5f64d521798ad544487e53132bc16f *R/cellTypeAssign.R
885b6cf9abc01cae0ca998c17b5e4b01 *R/cellTypeAssignMarkerGenes.R
1ac5854449ad598aa429df4d21d89e77 *R/cellTypeAssignSCRNA.R
b45b4c92bede149b381599f6e705502a *R/cellTypeProp-data.R
a8995e8d12a75795d10fe6d346a4fb90 *R/cellTypeRNAProp-data.R
60e7f1ee04d99f11407b5d3fd547168b *R/data.R
c93319fd78e6d4f5ce7c9b36b7679e65 *R/gene2rpkm.R
ab40a9602c6c6322b4296f88a37f010e *R/geneLength-data.R
66984d1c4ec5279f0627c5831347c272 *R/intersection.R
cdb2b9a8172bc6ace5223370bf40f995 *R/logpost.R
d8bc55764a7ae6bccac0337005c48e18 *R/max_rep.R
3baa10029d6a4883566d76715cb81714 *R/mixtureGEP-data.R
b0e770cf3ac447b7c4c3b1370752efd2 *R/pbmc_CDSeq_estprop-data.R
7b28d1963c1a499473a48a062a26beab *R/pbmc_ggplot-data.R
f8cce97d7d5c6565364a7c8249d2ca7e *R/pbmc_mix-data.R
b2667e7fa54b68a67bf75179395f955a *R/pbmc_true_prop-data.R
070ef2dcec66ecb44df93da5428be725 *R/read2gene.R
43fe2096b74ff30b115e1386e62a8114 *R/refGEP-data.R
f5c6c3e1dc0e944ba05452ebbcd2caab *R/sc_annotation-data.R
39c3f659d3658839f1632fb788295ab4 *R/sc_gep-data.R
9bebf2ea564f3b7167d06d13d9875088 *R/trueGEPgene-data.R
b032427fde2c7960606a0c7b447cc73a *R/trueGEPread-data.R
75c221d7d52b5853d8cc4485085383cc *R/trueGEPrpkm-data.R
0cf3e2e2d51d35fa42ee75776ac2556e *README.md
2993c9427a110a00edd4a0da0a365d78 *build/vignette.rds
c7f98870735a10daddd4a594239c54c4 *data/SyntheticMixtureData.RData
56044d041c202d88868f4b4debc88bf6 *inst/CITATION
58f0675802b07968e5df5fae7f464e77 *inst/doc/CDSeq-vignette.R
654353cf0eb3a8c2a3114441088f1b52 *inst/doc/CDSeq-vignette.Rmd
5f79748f12c320d92e8732ec30e98b0f *inst/doc/CDSeq-vignette.html
f8685ca4a15ae4739cb99360c3f799c4 *man/CDSeq-R-package.Rd
7b8468adc8bc9d575b9bc2174637056e *man/CDSeq.Rd
6acaa0526e7376bf9badf28acc8bd815 *man/Cell2RNA.Rd
63ab1380d1a954a31251bea03496b543 *man/RNA2Cell.Rd
3c054161691389a711b1dcd4e52fed6d *man/SyntheticMixtureData.Rd
c388e78d5831c1c7ea12560949af0ef2 *man/cdseq.result.Rd
686d1c91b58e4e4548a7e827182521c4 *man/cellTypeAssign.Rd
30e1aea6e82cfd9ff7cfcda2cf65df29 *man/cellTypeAssignMarkerGenes.Rd
ad3d5ede6d279493807e91bb06894890 *man/cellTypeAssignSCRNA.Rd
573d94d26bfcd961ecf4ceadd4279c21 *man/figures/README-fig1-1.png
72873bf7a2bec98757806280c4bade31 *man/figures/README-fig2-1.png
c52c1c17d52ff6b3af7717039f858c10 *man/figures/README-fig3-1.png
72873bf7a2bec98757806280c4bade31 *man/figures/README-fig4-1.png
33b884a5368c24e873db0e56d704c66d *man/figures/README-fig5-1.png
0921727634efaadad31341ef538df053 *man/gene2rpkm.Rd
4f03c067f253742e1ab70b9e20863e12 *man/gene_length.Rd
f78a66924d3274e1e4c1e8433f319aff *man/gibbsSampler.Rd
9e4de9d373493419e5677ed69b5e2931 *man/hungarian_Rcpp.Rd
e138e7d36d7c39997db58125bbe2d361 *man/intersection.Rd
f86a41584724d4151d787c2d8184e610 *man/logpost.Rd
f7606c18ec666607d97afc3e9f864bf9 *man/max_rep.Rd
367f6d10ef2afade667359090a99badc *man/merge_df.Rd
f98cc2f753551a381bdacfbd1ead23e6 *man/mixtureGEP.Rd
b0b13233cbcc8bb632af921da131d659 *man/pbmc_ggplot.Rd
4f457cab28cad6f3e6da213edc2de8c3 *man/pbmc_mix.Rd
d5eb7bc1ed210dbfc77aa588202d2399 *man/read2gene.Rd
fcb4aeb7467098eb73c5d36344416cba *man/refGEP.Rd
08bb143ed81d1f9fcbf99d70be5efcf1 *man/result1.Rd
98661df3cfcf9538b35de477b6c4de35 *man/result2.Rd
287da783d5636b5be2ae56ac68a1791e *man/result3.Rd
58b7778e523049ccf686c832f0ab5a34 *man/sc_annotation.Rd
debad2ba9c62183f2b06960c3504f7da *man/sc_gep.Rd
08fc0cc9c150946132daec00d7285f0a *man/seedMT.Rd
6e469f7350ce0e77882e357e297974d5 *man/true_GEP_gene.Rd
90b4d242e63c76511c6f400a9eaa5818 *man/true_GEP_read.Rd
6bd309231a75d2e061f1b68659dcd1bf *man/true_GEP_rpkm.Rd
df9235c1b7da1082c9c2a8c5e28b8379 *man/true_prop.Rd
34ed62e33e8ef48eb716fbe61015f3e1 *man/true_prop_RNA.Rd
fa18aa40b81b823511e7baf595d7d456 *man/true_prop_cell.Rd
be28f56d45d2bc0dfb164d2b0608965f *src/CDSeq_types.h
fe6f4ef2b2926a0433c1ffe3da3244a7 *src/GibbsSampler.cpp
cad65b06b78c6e569789ab192affeb1b *src/Hungarian.cpp
92a88ff31af7a88b16709679dc4387fd *src/Hungarian.h
61059660eb073d93e00e8ee054237071 *src/Makevars
61059660eb073d93e00e8ee054237071 *src/Makevars.win
04e2d491975321ec8112a84f83babef9 *src/RcppExports.cpp
ad9faf080b33662101e3db80b29c037c *src/cokus.cpp
75655406104b5b2e6d830d4ee0543322 *src/cokus.h
474ee0b2c6cb889a346be8153eb6d20c *src/hungarian_Rcpp.cpp
db03f0f4dea4ccdb629f2e459a5f0527 *tests/testthat.R
da8a8451b5a242289d3b06ff23f55573 *tests/testthat/test-CDSeq.R
61b526e0940dca715d2b2abea9bf696f *tests/testthat/test-cellTypeAssignSCRNA.R
654353cf0eb3a8c2a3114441088f1b52 *vignettes/CDSeq-vignette.Rmd
