d926fc87a4ba61674876c55ff498e8e5 *CHANGES
05a84edf0714b5409802e5168fd32afe *DESCRIPTION
9bb6c77cbea9668575153e366bf9984c *NAMESPACE
73b8d4532c52266c8ab9d9c9b5bef02f *NEWS
a369f706bdbd0eb6bb659c75f790320e *R/AFM3DPrinter.R
67a201e66951899cb336bb3bd67d6411 *R/AFMFractalDimensionAnalyser.R
c938dd40c08b6bf2e473672f403499d1 *R/AFMImage.R
21a5acdf9485885585f858e35952218a *R/AFMImageAnalyser.R
cc427b2faa2ee90ffcedae5d1e2150e0 *R/AFMNetworksAnalyser.R
ae5034c93fa225c6e3b050f744a83288 *R/AFMPSDAnalyser.R
2a31e42fd91286010c8ac71cf938d3fd *R/AFMReportMaker.R
0afe65a4946873c04e1bbabd80f539e7 *R/AFMVariogramAnalyser.R
6ae239623710a1f9d3f1f812cdb58577 *R/pkgname.R
41c6b00dd0bb61f180a4c2f428fb1529 *R/runAFMApp.R
1cf624c372172e3932fec36c43adaca0 *data/AFMImageCollagenNetwork.rda
c23e2375ea669ad0c4f8ae518780aaa6 *data/AFMImageOfAluminiumInterface.rda
7f66a1597dc601e7eefbd89795eb598c *data/AFMImageOfNormallyDistributedHeights.rda
6e44dbbbe91a99f4f74ceb9811a8fb74 *data/AFMImageOfOnePeak.rda
a7b99d9bd0ade85798fcf46252882fee *data/AFMImageOfRegularPeaks.rda
01342af93915b8901bfac16a3c63b6cf *data/datalist
6da167a4a5644328f8aca058b75740aa *inst/shiny/AFM-desktop/server.R
e49e74d04227fe93d18a22e03017bd8c *inst/shiny/AFM-desktop/ui.R
c076dbb9fe99391d977abf874e924f6d *inst/shiny/AFM-desktop/www/index.html
bc39151f6540c3874663ff770ccf1184 *man/AFM.Rd
19a16917cf75dcda16d2cd68a0f8376e *man/AFMFractalDimensionAnalyser-getFractalDimensions.Rd
e07499a489d20aa6b8af0f15a9cad488 *man/AFMImage-class.Rd
cbae057f17c630a1a24b40d8a7e9b554 *man/AFMImage-extractAFMImage.Rd
fecc3061f1fde562e583221ee94364b9 *man/AFMImage-filterAFMImage.Rd
89ad333d6a7117c473d0a396cd23a085 *man/AFMImage-getHolesStatistics.Rd
dfeaff4d23641c71f3cbd5d0c2f13e49 *man/AFMImage-importFromNanoscope.Rd
f5de4d3454f4621ca45474758c1c4680 *man/AFMImage-invertBinaryAFMImage.Rd
d8d3144c57b85336a276ce6219b03892 *man/AFMImage-isBinary.Rd
a0cb9d27fa63307f25a6a1aa1b7e3b86 *man/AFMImage-makeBinaryAFMImage.Rd
a5dc4d116beda56a3c56d0e50ed6db24 *man/AFMImage-multiplyHeightsAFMImage.Rd
250e3c7f5f6eae543f8098a1a5ab9b1d *man/AFMImage-sampleAFMImage.Rd
372a822052f7e229eb53a05f14f903c8 *man/AFMImage-saveOnDisk.Rd
eeb3f4e36e934917a0e9f5c3870f204a *man/AFMImage-simplifyAFMImage.Rd
905957b5cf5010325528a62b9ad37f96 *man/AFMImage3DModelAnalysis-class.Rd
8ae7afd594ad65637bc8f2069b309ae2 *man/AFMImageAnalyser-class-initialize.Rd
00e6867c2190bd58b452e2f2a0a90654 *man/AFMImageAnalyser-class.Rd
ca2ffdc2ddff6f1544153237c35852e7 *man/AFMImageCollagenNetwork.Rd
24e518312961995010ba802119c76f68 *man/AFMImageFractalDimensionMethod-class.Rd
ab4851b90726735e0d71e0cb28565b4d *man/AFMImageFractalDimensionsAnalysis-class.Rd
698241577f7908be69ac47e9053f847f *man/AFMImageNetworksAnalysis-class.Rd
5dc7a0ffc8d5c71c4a404d039bbe1d39 *man/AFMImageOfAluminiumInterface.Rd
d8b918bdbf0e27f84f718777ffbdd0d0 *man/AFMImageOfNormallyDistributedHeights.Rd
8e7ee54f78ded2a9ef977b8b68cf134b *man/AFMImageOfOnePeak.Rd
459c8f4a9a1d6270428ac7d0f3c46b2d *man/AFMImageOfRegularPeaks.Rd
0c9cf8df83fada227159263699b66dcc *man/AFMImagePSDAnalysis-class.Rd
9d58ff42ab776c418e157fe819c85476 *man/AFMImagePSDSlopesAnalysis-class.Rd
871adbf32463d2701eea4caa81e074c5 *man/AFMImageVariogramAnalyser-calculateDirectionalVariograms.Rd
fc9b6a8fe1a71b907e7184ed60258c3d *man/AFMImageVariogramAnalyser-calculateOmnidirectionalVariogram.Rd
a7d1ac8133d06edb476e825c7b868f7e *man/AFMImageVariogramAnalyser-getAutomaticWidthForVariogramCalculation.Rd
0a518d78115514d34f865b70f89f7173 *man/AFMImageVariogramAnalysis-class.Rd
9d95d9441fd15b86e4cea8d5a307b4ff *man/AFMImageVariogramAnalysis-evaluateVariogramModels-method.Rd
f730611abf3ad22a5bf53bc34e84b239 *man/AFMImageVariogramAnalysis-getDTModelEvaluation-method.Rd
3385bc304e63b759a4e283dd9108f382 *man/AFMImageVariogramAnalysis-getDTModelSillRange-method.Rd
2bad7a4c06c4e4a46dd914c0344f71dc *man/AFMImageVariogramAnalysis-updateProgress-method.Rd
f3caea1ce16fef748a2733042d44fb8f *man/AFMImageVariogramModel-class.Rd
49f308ae24715b1435a7bce36e93f52c *man/AFMImageVariogramSlopesAnalysis-class.Rd
71170f2703dc18dc98fca4246c3ff02b *man/AFMVariogramAnalyser-getSpplotFromAFMImage.Rd
cd7c576d110d335f4fbedf068da3b737 *man/AFMVariogramAnalyser-saveSpplotFromAFMImage.Rd
c9140a429f17f90f38c827fefb3b6b2b *man/AreNodesConnected.Rd
fa582157768a6988d0d41c951bd0f47e *man/PSD1DAgainstFrequency-methods.Rd
ee37d84c5b89e7d23fa4e990a2d41dc9 *man/PSD2DAgainstFrequency-methods.Rd
806e10da6938c46b1824c8ed976eb40b *man/RoughnessByLengthScale-methods.Rd
46cee1c6d9d7e2c72589b722a4504716 *man/addNode.Rd
c62bd1edd04d543b78e786b02d5cc828 *man/analyse.Rd
b89bd2d785a6f1c8b2dca8a9367068ca *man/calculate3DModel-methods.Rd
c2110d0d4fe3a8d20a99dc6ad68fdf25 *man/calculateGaussianMixture.Rd
6a87bdbf9386199c50a67be599940429 *man/calculateHolesCharacteristics.Rd
4cdd05280e4242a5618cbe85bae30cc3 *man/calculateIgraph.Rd
61c2c579b26fe93fe8170312aef139f1 *man/calculateNetworkParameters.Rd
2385442d72e710d947edf8db8637faff *man/calculateNetworkSkeleton.Rd
4110a6fe4585cc6bfa29745d5cf3c85b *man/calculateNetworks-methods.Rd
aa07e4aeb085503fb6671129603a157c *man/calculatePhysicalDistanceFromPath.Rd
cd4961053a91f953acc4d913740c625d *man/calculateShortestPaths.Rd
200cec0ffaa53eafa050ee10da6db456 *man/canBeRemoved.Rd
9db2f030186c73329f18567098362562 *man/checkIsotropy.Rd
198bd04eddbd57790971dc155fbd045d *man/checkNormality.Rd
46f565179aa7dfdbc8c8999d8350589a *man/createGraph.Rd
d4568a89321089d8b4ca9fb371b2d44c *man/displayColoredNetworkWithVerticesSize.Rd
5bd0b0c95aacaf55fc9d21f15061c896 *man/displayHolesIn3D.Rd
636c945c903cc05f91d2f483e981405a *man/displayIn3D.Rd
5d54e4c6703847fce49669dd0ffc81b3 *man/displaygridIgraphPlot.Rd
33d636c80253dc94fe10af0fae66ffca *man/displaygridIgraphPlotFromEdges.Rd
7eac46fb4d83618a33b27f8e7c2c6c70 *man/existsEdge.Rd
f5b0d9a08397e66170f69c5d85082ab5 *man/existsSegment.Rd
92d7637b0b222f676d5702d8cd07651a *man/exportToSTL.Rd
28d4827193ea4b749adf396c97653879 *man/fusionCloseNodes.Rd
5808995d741eef94ed7085ce44f5288b *man/generateAFMImageReport.Rd
ca6a42d531136efb47f8cebed873c172 *man/generateCheckReport.Rd
5058d28c71cbb4d82f823bc5b91de3f6 *man/generatePolygonEnvelope.Rd
b45010be009cc991112dfbd6ccc538b8 *man/generateReport.Rd
b969968b6376774a305ed72d4cb84898 *man/generateReportFromNanoscopeImageDirectory.Rd
d2d1cc135d107b4aa2e9fb4d7cc2a21a *man/get3DImageFullfilename.Rd
b0027d5b9831fd5d2fd5ae20952d4eca *man/getAllPointsToRemove.Rd
7b0462bf4b096850c6252be609aeb492 *man/getAngle.Rd
32345de0268db708be5d3efb69b765fd *man/getAutoIntersectionForOmnidirectionalVariogram.Rd
7ba1f2be25fd18ad4df29a8d6cd488e7 *man/getAutoIntersectionForRoughnessAgainstLengthscale.Rd
884acedcf443294fe901b9902e060876 *man/getBresenham2DSegment.Rd
284ce0c2831f34cdf41575e746e6ad5b *man/getCircleSpatialPoints.Rd
34124e569b750c4d41c3fbb209ac7c87 *man/getCoordinatesFromVertexId.Rd
bd7e2f57f3e22b57598e7be144cca1fe *man/getIntersectionPointWithBorder.Rd
95ff2a1213d853c591a00cd7c7b8279d *man/getListOfDiameters.Rd
dcf92fb529bd23bd2aab9b584a9071e8 *man/getLogLogOmnidirectionalSlopeGraph.Rd
fcc1a1a076c6f2472ac2bcbf570c069b *man/getMaxCircleMatrix.Rd
62070cc7f0a046e7c6343a8ac86be5d3 *man/getNetworkGridLayout.Rd
e2c20d55f3cc9c8c64ab1c30225fa874 *man/getNetworkParameters-methods.Rd
7822541a5fc68d0417b58683459ad9c0 *man/getNyquistSpatialFrequency-methods.Rd
4863cb97a9b6d865ef9a33fdea245835 *man/getPaddedAFMImage.Rd
2fbb07c7cd1e7c4983bdb595eb1b418b *man/getRoughnessParameters-methods.Rd
ef1948f9dad5130e6313f1bcd4d084dc *man/getSurroundingVertexesList.Rd
571c84780b255eb8b861751081dfc589 *man/getTopologyAFMImage.Rd
0d3bf2dc7f2d73392e21ae7538bf068e *man/getTriangle.Rd
42fe9dde526a908d61ae0d4eea882730 *man/getVertexId.Rd
008b6147affa1aa600d96d31f70357aa *man/gridIgraphPlot.Rd
25e9cff2290c061ba8455afe138446d8 *man/identifyEdgesFromCircles.Rd
cdf4969814e3fddfee2d740921e51443 *man/identifyIsolatedNodes.Rd
a91543fef225b22e2444e6f7b0ce049a *man/identifyMaxCircleRadius.Rd
eb4779546b0a5b56b02b0a71d0d3b365 *man/identifyNodesAndEdges.Rd
a65c3106c6a92f7bdb9dd46e4cfde6cc *man/identifyNodesWithCircles.Rd
f4a4c60dd6501766ba7d0abdfdc7c07a *man/isAdjacentToBetterVertex.Rd
036a32165caf6d19dd484e6b5b63bf48 *man/isAngleBetweenEdgesAlwaysSuperiorToMinAngle.Rd
5cc72078668dd6eefc33dda49d9546d5 *man/performAllPSDCalculation.Rd
2496f16f38814bf94c0002a0c7dd929a *man/printVariogramModelEvaluations.Rd
fd3c93fcedc84d889c9714139796cb9e *man/putAnalysisOnDisk-methods.Rd
9d83e1d72ab3d3ac0daceafe5f22c6d1 *man/putImagesFromAnalysisOnDisk.Rd
3dca2163846096c25beb30ac2cbccdb3 *man/removeLonguestEdge.Rd
c8ad1a9d8a2230fbe3c3f061550a954a *man/removeNode.Rd
36483ff795ba05b52b67338610863dd7 *man/runAFMApp.Rd
059e98e594b4c522dfb513cee41f9cbc *man/saveOnDiskIntersectionForRoughnessAgainstLengthscale.Rd
bb8e9f1c542f6aa81c5e54579c687711 *man/shiftFFT2D.Rd
03cdb129b83977ea7345006e649dcaf8 *man/shiftedPSDuv.Rd
e575d9e15eea865b95b83dbdae73f010 *man/simplifyNetwork.Rd
9f0b06c4edd5d669d01894633fdb214e *man/thinImage.Rd
2e3feccfcca3b0f96a5438b399cf4287 *man/totalRMSRoughness.Rd
7b9154a0848d63fd1087ee118d904932 *man/transformAFMImageForNetworkAnalysis-methods.Rd
6111964539ac4dc79bdb38861e80534d *tests/testthat/configuration.R
50c3442001d0c8945ad8d115becde917 *tests/testthat/testAFMReportMaker.R
