cca380632443a761caa00d0c97540761 *DESCRIPTION
0f2d1b79f9e52d4d0a84216ca51ec151 *NAMESPACE
d35120c970032c0cdb75ca68d065e803 *R/RcppExports.R
5b48af02474463541b32c8d153c3f4a0 *R/align.clustal.R
9b41e3543caab97e111e130738b93cd3 *R/align.folder.R
2bc97f862d14c2d2bb705166d92c607d *R/align.mafft.R
8ed7a8675e6d203c9d7c6fa4e80c01c2 *R/allele.freq.format.R
8a0759839a86c6d569614b651429a043 *R/allele.freqs.R
5bc6fbbe3ec9d77704e950408ad0b184 *R/allele.split.R
dd6086e16d65b164cf39178d429f654e *R/allelic.richness.R
46ae5959ac59d8143d01e74d071136c4 *R/as.data.frame.gtypes.R
69558091e91e58179c0129f71deebb83 *R/as.dna.seq.R
ac4fcfcb1b5ee695db6bf76f118181e9 *R/as.matrix.gtypes.R
fc40de65c77a5cd5cec0b6f5945c13ea *R/base.freqs.R
df6f2bad5aa1374d8e8004afddf2532d *R/check.genotypes.R
f55741c6945a2d0ff84c6ca8aee09334 *R/check.gtypes.R
4338d3b14f58004aa3506c6e820cec19 *R/check.seqs.R
9f874051d8eb9dfb824de007e4c91ef9 *R/clumpp.run.R
c99c66d88d5be3fc6c387baff9452cbf *R/create.consensus.R
7fc58c74a47f21e7da6ac1b316e4becd *R/decode.R
82dd8be1931f399957732af813a14741 *R/decode.loci.R
cdaf73fdfc2657a5570701cb550cfcc1 *R/decode.sequences.R
2d497b3887df2c85c400db0745156641 *R/decode.strata.R
ca91751d888329da5556cf07649131cb *R/diversity.R
044ad4e994a5ba8622403e85eb3e2cc4 *R/dup.genotypes.R
80cc542b0177ccd38c87d190f3cc1fb7 *R/exptd.het.R
8c62a50fc5e680212129f6f36505cb15 *R/fastsimcoal.run.R
966c97a75bbaaacc4df521c797a2b2af *R/fastsimcoal.write.R
bb1903d9212d67d3d997286ee8837e4b *R/fisher.method.p.R
f687207ad7302feef02a964b0a801644 *R/fixed.differences.R
07777dc0f92abe9c78dd065f63cbb2e9 *R/fixed.sites.R
6ce497c527993db298c953e1f72d4f4c *R/fst.to.nm.R
3815d8d4589e8cf3fe221a6d52dd618b *R/gelato.plot.R
39740bd5ae8b579505a7980e5a914df5 *R/gelato.run.R
31843eca697aad0c16e0790fe34bca94 *R/gen.data.from.freq.R
ff7acbb7615eb45a0e8f9a2e670f9a96 *R/genepop.run.R
0dba21bb669d711d2c399e01f88a3f7a *R/genepop.write.R
e0ba55d75cbe2c41dce3931e9eade781 *R/gtypes.R
6e60aeed909ad0ab856ccb8148f511ca *R/gtypes.character.R
d07a53f6d2168ebe640279c7a5765bc4 *R/gtypes.default.R
aed2a95e4c2e2746a0ecbd3a65d3a52d *R/gtypes.list.R
c804141aed97ec49e177b014e920b3b7 *R/h.stats.R
e4536e77d095500b0957d81ecd31aaf8 *R/hap.freqs.R
f695e81ffb2a70e391caa11b8a8fa33e *R/haplotype.likelihoods.R
d767d118420e5008b173222990c031bf *R/haplotypic.diversity.R
48ef408b520d0005bda80a1080ac0904 *R/hwe.genepop.R
7ff01fb8ddc6f48e03b5bb2d4f5f1c5c *R/is.aligned.seq.R
73eab25866eaad81dc81f611c835f11c *R/is.diploid.R
e39a3c39a56987d220d984418039f24b *R/is.dna.seq.R
bb1f4026f4f49306c876215e737a5a6e *R/is.gtype.struct.func.R
2e6fff19ea581eea558b66cb69deafc5 *R/is.gtypes.R
7006d31f58d84aed4a173dd0ed7c3836 *R/is.haploid.R
847c82990204047f8df2d16123ed1455 *R/is.ti.tv.R
123270aedbf5754bd33f72d812b121ef *R/iupac.code.R
db9a8586ef7537b4909f7da087de4a59 *R/jack.hwe.R
a80dec73f599faabd1353ff4d2e2fc0b *R/jack.influential.R
6b11769dc9c9050aa5514fbf8bd3b4c4 *R/jmodeltest.run.R
4e1a575fd7a70011f55af90b44e31df5 *R/label.haplotypes.R
cc8c735c66215811e8d0499742074c67 *R/label.haplotypes.default.R
249a1317f88482fbc2dd851452c0bf33 *R/label.haplotypes.gtypes.R
aabe958bf83907e3da942e6d8c473746 *R/linkage.genepop.R
195194ac879646cacf4779c28ff72d5d *R/locus.cols.R
7ecdeefe4e00416bfc9626cbb8fa54c1 *R/locus.names.R
e1e13b9adb02e744ec5461fa9ac46471 *R/low.freq.subs.R
e50544addcbb166f36f69c533ee94df0 *R/merge.gtypes.R
5e74b5512fb28623e6d4e18e906a49a8 *R/most.distant.sequences.R
d353042d4168f8a117d322509c5207f2 *R/na.omit.gtypes.R
a83731a950e2a694d70cff9e9473a068 *R/nei.Da.R
1afc35b093de7ee78162a45c8b9d18cd *R/nucleotide.divergence.R
2ee55ffd1dd8d71e25f1550d66d22394 *R/nucleotide.diversity.R
2c8b9c4eb397965d0b2e77f799fe5f82 *R/num.alleles.R
e0b0e96901154f415b092b1996eecbf1 *R/num.alleles.shared.R
88380504a9fe152ea99f3fc89389a4c7 *R/num.gens.eq.R
c89a94679c378a689e3035c0914ce324 *R/num.loci.R
090bc1310b8a97e5a8789f5b7aa68be8 *R/num.missing.R
4e85f42b779dfecaa4ea8ceb111032de *R/obsvd.het.R
650e9559390428ccdc5f1420c50d15f6 *R/overall.test.R
6489b07ac8fc66feaa9f59a1efb3b33a *R/p.val.R
ebd281f912e590528e518b2b67e10d7e *R/pairwise.shared.loci.R
70e8f0647754dda6610997db96fce97c *R/pairwise.test.R
dc88735b4475c34312a7651a901f2bd2 *R/pct.unique.haplotypes.R
ca62b2a2bc5bc0be3fa944030d088caa *R/phase.filter.R
6843cc85256a256e5f2fa884f34a13db *R/phase.posterior.R
41442048a757761fb158eeaf09e1ba6a *R/phase.read.pair.R
a8522cd3f417123f489291cbdbee21ce *R/phase.read.sample.R
a043bdea688d4e9d471ce0bc0e8a9769 *R/phase.run.R
b524a2f1059ae42ff56b38a1295abf36 *R/phase.write.R
e4dedb63d213a01b749cdf786498b961 *R/plot.jack.influential.R
e0d631cb0fe67ad82ad7986bff0a3402 *R/pop.diff.test.R
52c7627b206ee909ee247c894b8c4ec3 *R/print.gtypeSummary.R
59254f783ab1955f6c6f80a6e8b9ed8e *R/read.arlequin.r
12c426e65273b0328965d6d59296cdc0 *R/read.fasta.R
2d863d57999e950a96d72b6207a33ff4 *R/read.gen.data.R
4b343d99331b5febb85b170e27f85185 *R/read.mega.R
12f69c5d96b4fad70c455ad55728cbf3 *R/relabel.sequences.R
8de18ddfafdac19c2e58fd7470c84636 *R/restratify.R
b805e0551b6e6ed874bb5949c7ea4174 *R/sequence.summary.R
23d0e4f7f046f19b650c7e2666a45e7d *R/shared.haps.R
a7aada968295af6b52173bba0b92c0be *R/sim.gamma.haps.R
a31f5cdce92f99ecf509326c8b7ff319 *R/smry.by.locus.R
ef91664cff7f173e1eee1d5b166df0ad *R/smry.by.sample.R
ea4f64c61af5369facfa2eecc388100d *R/stat.chi2.R
cf23d9dbbf3f1f46b0734bf48b8e9ffd *R/stat.d.jost.R
1492acc5959b79a9711dee452f57a8a3 *R/stat.fst.R
e112540b5d78401edc34b7f1f94cab4a *R/stat.fst.prime.R
18668af3e4c0257c2be363d9b84cd4ba *R/stat.gst.R
0fe341ac31a30b2fbce35c35bfd80854 *R/stat.gst.dbl.prime.R
123a4916d7089c9da3cefdedc489cec6 *R/stat.gst.prime.hedrick.R
95571430717a03c8a6be7a7b5bd3fd59 *R/stat.gst.prime.nei.R
fcfc75361b3b2591609bdf4a11db69b6 *R/stat.list.R
742eac5682a2fc69521eafcab6dc64cf *R/stat.phist.R
5045fda495e5ab13cdb4ecfac3091459 *R/stopifnot.aligned.R
841c4af3770b804e697f21f116656652 *R/stopifnot.gtype.struct.func.R
db327c78b2baf8478d8f5c1b39c09d6f *R/stopifnot.gtypes.R
235aa5e7e21419a9248329e67d154034 *R/strata.pairs.R
23f062954dc81af7da5345d02af38a5d *R/strata.split.R
763777cfa5cbf8bcf77c559553812b14 *R/strataG-package.R
ac6938a9795d23c2fa45132a092c22db *R/structure.evanno.R
59b51d125bac91377359d82206222fbf *R/structure.parse.q.mat.R
6722d926605ab9c89155b58b3543d250 *R/structure.plot.R
acae93619b5e46aa919e3d5ca7f07e67 *R/structure.read.R
972732727e95753aa3777952013a29fa *R/structure.run.R
515e7847543fb6dd6c7d00eefea94058 *R/structure.write.R
31d7ddc90840ae415b93df4aa59a6099 *R/subset.gtypes.R
89e740f343840aa762bcc8fcd03171b8 *R/summarize.loci.R
1a567ed7ebcace72901e18a592f96e09 *R/summarize.sequences.R
8eef793b1d75bb423326fdfaf4d54aaf *R/summary.gtypes.R
cb9a92438742f74e4e20997041bfc0f0 *R/sysdata.rda
476e5950e5e1e9bba72a282c89b60704 *R/tajimas.d.R
304051b37a9dc5fe835fcdce4ced3ede *R/theta.R
114beeec4f38d6dd6a35e04f7ddf03ba *R/ti.tv.ratio.R
86920af446d85da609856551bcfa9204 *R/trim.ns.R
3113498de4b68c220125f62c2f405c33 *R/valid.iupac.codes.R
1a24cc2c571966fb9e9f732de8b8cc3c *R/variable.sites.R
30894101f3758b3afa3cb0774ae77a5c *R/wright.fst.R
ef17fc38bcb643966ccd3315f4c07aff *R/write.arlequin.R
be1246a5d31345768508fb6e9aa9f7d7 *R/write.fasta.R
4a256bdd6900d80d8db85c9f92413d2b *R/write.gtypes.R
0d7d7db88d45f82ecac339b442ade19b *R/write.mega.R
a812f3724a4b151143665d2e6a4469f2 *R/write.snapp.nexus.R
2665b0dad83bbc83f3ab5862516582ea *data/bowhead.snp.position.rda
eda94674fa43de5bf2079c442c65fd6e *data/bowhead.snps.rda
c7b883e4c8cc458c8f9550251ffe2d5b *data/dolph.haps.rda
2b85d7d52533b615d9c43e44aec65f42 *data/dolph.msats.rda
de42d316c0f9025dc160c13af140eb7f *data/dolph.seqs.rda
aff2ea92ae5d1b68e9dbb07e3638bb91 *data/dolph.strata.rda
8cefe3ff3eef75ed5da9568f953628df *man/align.clustal.Rd
30f1e160a9922bd3ce33101c85c20435 *man/align.folder.Rd
4c209a5af17966b631ada63f82fa12cd *man/align.mafft.Rd
49b52e0b5cb28fb7bf141facdec3321e *man/allele.freq.format.Rd
2e884098a90ae3c92d99f2e78eaa334a *man/allele.freqs.Rd
5a44b961019cc335f688273b933bb1bc *man/allele.split.Rd
f0c4411cb18ee49c5c575c20fa63ea38 *man/allelic.richness.Rd
a8491649bd3252ce84445cfa8d1152fb *man/as.data.frame.gtypes.Rd
33602d80138e547801fba21369ccc061 *man/as.dna.seq.Rd
1a9d752a12a9e9d7c8fe7d8949b55a61 *man/as.matrix.gtypes.Rd
ccac3616e8bf0dfeae55ab6ab53f1eca *man/base.freqs.Rd
d16f910561c1ad7f7fec392ee3bccdd6 *man/bowhead.snp.position.Rd
2b3f0eeec6979c2e5d40dd160ffa755d *man/bowhead.snps.Rd
a1fbee9e2241af8adff11aba0b0ff7a3 *man/check.genotypes.Rd
01c49bdd7b42a77a89124bc2461e70d7 *man/check.seqs.Rd
448e3e3663ae7226f015650fbb9fecdf *man/clumpp.run.Rd
82f99f3d933876775b371ebf2b27b5d9 *man/create.consensus.Rd
c749a6a5cb000a1ddf20eb7c8cfb6cc2 *man/decode.Rd
0c4e60cb3893fd2d939bc76604151dce *man/diversity.Rd
a31caeae5cdb9069d7c4a54d2ffc2109 *man/dolph.haps.Rd
11f28d141b7f2f0833528a268c67f8a9 *man/dolph.msats.Rd
099b1794d6c5acf981ad839786a00759 *man/dolph.seqs.Rd
e15cd14f85b65a1e49e4be76f4df9ad5 *man/dolph.strata.Rd
b85099a01d38640d07ff4e2f7f2d04fd *man/dup.genotypes.Rd
2e2e507c45ae3d7ea940c815ecf57d90 *man/exptd.het.Rd
43b49438e404b5459dc2e5f571acbec7 *man/fastsimcoal.run.Rd
0ab02bd8c8829ed2e4370fe1964adc88 *man/fisher.method.p.Rd
6e21b434bb58a395f8dac579c169037b *man/fixed.differences.Rd
2fc3d2169a097eea22d2495496231598 *man/fixed.sites.Rd
ccc7b5502ba912b5d626036b118902a7 *man/fst.to.nm.Rd
d394f57c3a2d942054ec733f62cbbbd9 *man/gelato.plot.Rd
1f5422bba39788603e854a80627635ba *man/gelato.run.Rd
d39d72a544d1e24a2db5609542423d15 *man/gen.data.from.freq.Rd
9903dc1babc8adea452877094773875c *man/genepop.run.Rd
64c922f4d4cbbb31f2fe1019cf3626a6 *man/gtype.struct.func.Rd
a8ce828475e203dfd6781951969d32be *man/gtypes.Rd
9fd6ae2e59676d63312ca2a614e2d3f4 *man/h.stats.Rd
cdcf914f5a65d824157f0382be549580 *man/hap.freqs.Rd
ef18558d60667fec97e2089bfeda8677 *man/haplotype.likelihoods.Rd
d4bd04c92d7bc5fa53f16badf27ba59d *man/haplotypic.diversity.Rd
cf9f10c1ba7886409a8325770bcd0c2b *man/hwe.genepop.Rd
27560f8f6a9224f324266399a2eb0fd2 *man/is.diploid.Rd
542c7315b973a1cb057c466d998c7a4e *man/is.gtype.struct.func.Rd
a01e0a412acf853a9fdbd79965a33d68 *man/iupac.code.Rd
d97db08e7f5ce7ae1123ae75c1a7baa6 *man/jack.hwe.Rd
02a1e8207dc174a6115d7c2ab4ee02d8 *man/jmodeltest.run.Rd
7f5bb84d5dd297ae25db23a59d6fdb1b *man/label.haplotypes.Rd
f112c440865d13fd5962623016eb6d9f *man/linkage.genepop.Rd
e9c06bd44627d842a351baf31200bf40 *man/locus.names.Rd
869e18d91b0846c8e95e0c514304747d *man/low.freq.subs.Rd
dcc21548c92c9de85533f05cd311edc8 *man/merge.gtypes.Rd
32e6237d72b35d6daf11aa4a24b7e806 *man/most.distant.sequences.Rd
af9442e0d45879dcf8678c5ec8e87f1e *man/na.omit.gtypes.Rd
6f2e7e93e4a3a09d23ebb78c41fced5e *man/nei.Da.Rd
f543c5e63e86107f73acb93c469ef7f2 *man/nucleotide.divergence.Rd
362a6819fa2f872cc26baf6afb9d4502 *man/nucleotide.diversity.Rd
3fa24bed0ad683bc30a54bf31ec8b67e *man/num.alleles.Rd
2d0d2ff62b05b1b3d8b481d575ea11b3 *man/num.alleles.shared.Rd
8d74c494a18e94dce9a8bea4aeac57ed *man/num.gens.eq.Rd
7e223bbe7f02b3b8d801de0c7c32448d *man/num.missing.Rd
ec44b824db4a0bf5673ec562ddaa8df7 *man/obsvd.het.Rd
405567080e197c32003d32fc8c172796 *man/p.val.Rd
f720b7f4d30910439a3ea584d87b1f89 *man/pairwise.shared.loci.Rd
8ebf201b5d143450ba993c844a725a08 *man/pct.unique.haplotypes.Rd
9c69ab14a3c7995218b67c4875750278 *man/phase.run.Rd
017cd0981186c270f3826275590d7edd *man/pop.diff.test.Rd
de7f5e91f33b77a5e3f0a56eef338098 *man/print.gtypeSummary.Rd
2a0b3d663269b809a7863a138e458c15 *man/read.arlequin.Rd
0dda2d7537a96d88ddcef12447a9cdf7 *man/read.fasta.Rd
595c20b819c245d8d3a6c375388f1e59 *man/read.gen.data.Rd
8545b084a4f55681bf6047279876b3cb *man/read.mega.Rd
a7b474b604042e2973540a519ef6168b *man/relabel.sequences.Rd
58ddc8321f8109cde9e666b2986ef9d6 *man/restratify.Rd
bf3050d707bf95f1fa23df12c3c36d84 *man/sequence.summary.Rd
f091279f299bde22b67299b564e3dbbd *man/shared.haps.Rd
1156e560704f4cbcd4ea24ba85120daa *man/sim.gamma.haps.Rd
1941fe9ef7c4a1d2379545c4391d506d *man/smry.by.locus.Rd
70ae9da3c5bafa41cb79bb7917625026 *man/smry.by.sample.Rd
f89456f041b6c0c8dc4116ea3f60eb2d *man/stat.chi2.Rd
b968ae9b07a01bb467a265dbd6bd1589 *man/stat.d.jost.Rd
c386409c446b94a1db5ed57ce7a479cc *man/stat.fst.Rd
0d66c272a7f06afd322747b574c25ba7 *man/stat.fst.prime.Rd
64a73074b0490e127fc647db8fb05c8d *man/stat.gst.Rd
08e79d4eb9ac4ee4e321b8a07ad16e39 *man/stat.gst.dbl.prime.Rd
fc8cf1dc89c907cf4f1f8226daab003d *man/stat.gst.prime.hedrick.Rd
e2b2b4a9103146bd0ecef1a918661647 *man/stat.gst.prime.nei.Rd
0fc92adfaeab97c508036b636739ed45 *man/stat.phist.Rd
3f35284c58676810b89b7a6c74196f52 *man/stopifnot.gtype.struct.func.Rd
6ba9adc11c07197a8448115362351a8d *man/strata.pairs.Rd
8b342698f36223d752590761d6a3e69a *man/strata.split.Rd
290b39d6b44eba38ef200ff8b25c464b *man/strataG-package.Rd
4e52ab8d20b27a289d53f64245304349 *man/structure.evanno.Rd
4da0b197d5434b46f71351cd656ee5d0 *man/structure.parse.q.mat.Rd
addb507e814fb135fe38b050ed19420f *man/structure.plot.Rd
8d732d6778218bbda19040124b9eb99f *man/structure.run.Rd
83c7c37ff76d2e5be05ef3ffdac808b4 *man/subset.gtypes.Rd
6ca627ce89dcac0eb2beb7c6a3d8dc8a *man/summarize.loci.Rd
88bb6e6a0cd8f89268b9c1968d262980 *man/summarize.sequences.Rd
ce64bc8dcba96ab1d06227c545b3ed54 *man/summary.gtypes.Rd
d97fd715f48c9701a696a8e01770c48e *man/tajimas.d.Rd
5c59fad436134565bea81700c285d191 *man/theta.Rd
9d2f3a2b145075c9cba8123aa306a1cc *man/ti.tv.ratio.Rd
0c380acf5cb3ece9a376a8389cf1725a *man/trim.ns.Rd
6427266f3b0bbf855a6b91d326c73ba9 *man/valid.iupac.codes.Rd
c0afd534b1c376d36819216caa13abb7 *man/variable.sites.Rd
282ebf14403f08c180f573dd748b8363 *man/wright.fst.Rd
c9d55c87ebcad31f9a6ca214ac59fd89 *man/write.gtypes.Rd
0f4595d2ff090c6958d7731f3a994300 *man/write.snapp.nexus.Rd
d6d05472829337a3e494496a793c0acd *src/RcppExports.cpp
fa1184006b0d937cc4808197b41f5c67 *src/hStats_C.cpp
0daec130d2320567fda63b9e4f0768da *src/misc.funcs.cpp
40986be22948343a04fa466821d5ebaa *src/stat.chi2_C.cpp
49c0352fe4d676e72477eef542726d34 *src/stat.fst_C.cpp
0098577ac313101ad46efe28b3ea6162 *src/stat.gst.dbl.prime_C.cpp
d76c5813efebfb653864b49ca99d876b *src/stat.gst.prime.hedrick_C.cpp
e0e26c1ce0d7cf9bdf37de1c3cb12154 *src/stat.gst.prime.nei_C.cpp
99e882dbbaa37f3917acfd98d934cc54 *src/stat.gst_C.cpp
c4ecfd839729a6d56d4b859b13372083 *src/stat.phist_C.cpp
