* 2017-03-19(Tal Galili) Added Jonathan Sidi as a contributor to the package. |8e254ce| 
|  DESCRIPTION | 1 +
|  1 file changed, 1 insertion(+)

* 2017-03-19(Tal Galili) help "dendrogram" work again |639098f| 
|  R/heatmaply.R | 7 +++++--
|  1 file changed, 5 insertions(+), 2 deletions(-)

* 2017-03-19(Tal Galili) Correct use of config and modeBarButtonsToRemove |2963637| 
|  R/heatmaply.R | 8 +++++---
|  1 file changed, 5 insertions(+), 3 deletions(-)

* 2017-03-19(Tal Galili) clean the modeBarButtons from irrelevent icons |07b67bf| 
|  NEWS          |  1 +
|  R/heatmaply.R | 12 +++++++++++-
|  2 files changed, 12 insertions(+), 1 deletion(-)

* 2017-03-19(Tal Galili) Fix "RColorBrewer_colors.Rd: non-ASCII input and no declared encoding" (I hope) |772b592| 
|  R/RColorBrewer.R           | 2 +-
|  man/RColorBrewer_colors.Rd | 2 +-
|  2 files changed, 2 insertions(+), 2 deletions(-)

* 2017-03-19(Tal Galili) RColorBrewer_colors - added colors to be available for the heatmap.       The sequential palettes names are (less important since we have viridis):  Blues BuGn BuPu GnBu Greens Greys Oranges OrRd PuBu PuBuGn PuRd Purples RdPu Reds YlGn YlGnBu YlOrBr YlOrRd       The diverging palettes are: BrBG PiYG PRGn PuOr RdBu RdGy RdYlBu RdYlGn Spectral |d47cfb6| 
|  DESCRIPTION                |   7 +-
|  NAMESPACE                  |  27 ++++++
|  NEWS                       |   6 +-
|  R/RColorBrewer.R           | 203 +++++++++++++++++++++++++++++++++++++++++++
|  man/RColorBrewer_colors.Rd | 119 +++++++++++++++++++++++++
|  vignettes/heatmaply.Rmd    |  10 +--
|  6 files changed, 363 insertions(+), 9 deletions(-)

* 2017-03-19(Tal Galili) Added the parameters: distfun_row, hclustfun_row, distfun_col, hclustfun_col. They allow a more refine control over the dendrograms of the rows/columns (without the user needing to create the dendrograms from scratch) |e300694| 
|  NEWS             |  1 +
|  R/heatmaply.R    | 17 +++++++++++++++++
|  R/heatmapr.R     | 37 +++++++++++++++++++++++++++----------
|  man/heatmaply.Rd |  9 +++++++++
|  man/heatmapr.Rd  | 11 ++++++++++-
|  5 files changed, 64 insertions(+), 11 deletions(-)

* 2017-03-18(Tal Galili) Added the parameters hclust_method, dist_method to allow a more refined control over dist and hclust functions which are creating the dendrograms. A user wanting an even more refined control should just supply dendrograms directly to Rowv and Colv. |3be8df4| 
|  DESCRIPTION      | 12 ++++++------
|  NEWS             |  3 ++-
|  R/heatmaply.R    | 12 ++++++++++++
|  R/heatmapr.R     | 25 +++++++++++++++++++++++++
|  man/heatmaply.Rd | 15 ++++++++++++---
|  man/heatmapr.Rd  | 15 ++++++++++++---
|  6 files changed, 69 insertions(+), 13 deletions(-)

* 2017-02-15(Tal Galili) Simplfy heatmaply document in order to avoid future warning messages. |c5870cc| 
|  R/heatmaply.R    | 50 +-------------------------------------------------
|  man/heatmaply.Rd | 20 +++-----------------
|  2 files changed, 4 insertions(+), 66 deletions(-)

* 2017-02-15(Tal Galili) *Cluster* heat maps. |9b11e55| 
|  DESCRIPTION | 2 +-
|  1 file changed, 1 insertion(+), 1 deletion(-)

* 2017-02-15(Tal Galili) Minor improvement to the example |f9e5eae| 
|  vignettes/heatmaply.Rmd | 4 ++--
|  1 file changed, 2 insertions(+), 2 deletions(-)

* 2017-02-15(Tal Galili) Fix heatmaply.heatmapr to work again with Rowv (fix a bug that was introduced in the previous 3 commits) |0d383f9| 
|  R/heatmaply.R | 28 ++++++++++++++--------------
|  1 file changed, 14 insertions(+), 14 deletions(-)

* 2017-02-15(Tal Galili) Add examples to heatmaply's Rd and the vignette on using Rowv/Colv. |6c09b7f| 
|  DESCRIPTION             |  2 +-
|  NEWS                    |  3 ++-
|  R/heatmaply.R           | 18 ++++++++++++++++++
|  man/heatmaply.Rd        | 18 ++++++++++++++++++
|  vignettes/heatmaply.Rmd | 29 +++++++++++++++++++++++++++++
|  5 files changed, 68 insertions(+), 2 deletions(-)

* 2017-02-15(Tal Galili) Add dendrogram control parameters to heatmaply's .Rd docs. This solve #34. |e669700| 
|  R/heatmaply.R    | 74 ++++++++++++++++++++++++++++++++++++++++++++++++------
|  man/heatmaply.Rd | 60 ++++++++++++++++++++++++++++++++++++++++---
|  2 files changed, 124 insertions(+), 10 deletions(-)

* 2017-02-15(Tal Galili) Allow Rowv/Colv to also work for hclust (by turning them into a dendrogram). |ae6dea1| 
|  NAMESPACE       | 1 +
|  NEWS            | 3 +++
|  R/heatmapr.R    | 8 +++++++-
|  R/zzz.R         | 2 +-
|  man/heatmapr.Rd | 2 +-
|  5 files changed, 13 insertions(+), 3 deletions(-)

* 2017-02-08(Tal Galili) Once plotly will support axis which are positioned on the right, this should make it also work in heatmaply. |ab4d527| 
|  DESCRIPTION   |  2 +-
|  R/heatmaply.R | 14 ++++++++++----
|  2 files changed, 11 insertions(+), 5 deletions(-)

* 2017-02-01(Tal Galili) Vignette - The inclusion of xlab/ylab/main texts. |b599554| 
|  vignettes/heatmaply.Rmd | 6 ++++--
|  1 file changed, 4 insertions(+), 2 deletions(-)

* 2017-01-22(Tal Galili) file parameter - allows to save a heatmaply plot as an HTML file. |0f12bff| 
|  DESCRIPTION      |  6 +++---
|  NAMESPACE        |  1 +
|  NEWS             |  6 +++++-
|  R/heatmaply.R    | 27 ++++++++++++++++++++++-----
|  R/zzz.R          |  3 +++
|  man/heatmaply.Rd | 16 +++++++++++++---
|  6 files changed, 47 insertions(+), 12 deletions(-)

* 2017-01-22(Tal Galili) Found the problem - is.vector(factor) == FALSE |5fb21fa| 
|  R/heatmaply.R           | 7 -------
|  R/heatmapr.R            | 4 ++--
|  vignettes/heatmaply.Rmd | 5 +++++
|  3 files changed, 7 insertions(+), 9 deletions(-)

* 2017-01-22(Tal Galili) Fix "col_side_colors and x have different numbers of columns"? |f9d15df| 
|  R/heatmaply.R | 2 +-
|  1 file changed, 1 insertion(+), 1 deletion(-)

* 2017-01-22(Tal Galili) make row_side_colors/col_side_colors work for vectors as well (by turning them to a data.frame). Fixes:  Error in if (dim(row_side_colors)[1] != dim(x)[1]) stop("row_side_colors and x have different numbers of rows") : argument is of length zero |34e1105| 
|  DESCRIPTION   |  4 ++--
|  NEWS          |  8 ++++++++
|  R/heatmaply.R | 10 ++++++++++
|  3 files changed, 20 insertions(+), 2 deletions(-)

* 2017-01-21(Tal Galili) heatmaply 0.7.0 depends on dendextend 1.4.0 |79df26b| 
|  DESCRIPTION | 2 +-
|  1 file changed, 1 insertion(+), 1 deletion(-)

* 2017-01-21(Tal Galili) If the "lwd" is already defined in Rowv/Colv then this parameter is ignored (it is checked using \link[dendextend]{has_edgePar}("lwd")). |b4b19f3| 
|  DESCRIPTION      | 2 +-
|  NEWS             | 2 +-
|  R/heatmaply.R    | 7 ++++---
|  man/heatmaply.Rd | 3 ++-
|  4 files changed, 8 insertions(+), 6 deletions(-)

* 2017-01-20(Tal Galili) * main - a new parameter for setting the title of the plot. * the margins parameter now accepts 4 elements (previously it was only 2), for bottom, left, top (relevant for the plot's title) and right margins. |1a3f5a3| 
|  NEWS             |  2 ++
|  R/heatmaply.R    | 25 ++++++++++++++++++-------
|  man/heatmaply.Rd | 17 +++++++++++------
|  3 files changed, 31 insertions(+), 13 deletions(-)

* 2017-01-20(Tal Galili) Allow k_row and k_col to accept NA. This will pick the number of clusters using dendextend::find_k |a7baf3e| 
|  NAMESPACE       | 1 +
|  NEWS            | 2 ++
|  R/heatmapr.R    | 4 ++++
|  R/zzz.R         | 2 +-
|  man/heatmapr.Rd | 6 ++++--
|  5 files changed, 12 insertions(+), 3 deletions(-)

* 2017-01-20(Tal Galili) is.na10 - added description, and also return integer instead of numeric. |6795d1f| 
|  R/is.na10.R    | 6 +++++-
|  man/is.na10.Rd | 5 +++++
|  2 files changed, 10 insertions(+), 1 deletion(-)

* 2017-01-20(Tal Galili) Fix no visible global function definition for ‘na.omit’ / ‘ecdf’ |5f0d2b4| 
|  NAMESPACE | 2 ++
|  R/zzz.R   | 4 ++--
|  2 files changed, 4 insertions(+), 2 deletions(-)

* 2017-01-20(Tal Galili) update to is.na10 |d148cd4| 
|  vignettes/heatmaply.Rmd | 14 ++++++--------
|  1 file changed, 6 insertions(+), 8 deletions(-)

* 2017-01-20(Tal Galili) Check that x is either a data.frame or a matrix. |8e93476| 
|  R/heatmaply.R | 3 +++
|  1 file changed, 3 insertions(+)

* 2017-01-20(Tal Galili) is.na10 - Indicates which elements are missing (either 1 and 0). Helpful for NA heatmaps. |6cab004| 
|  DESCRIPTION    |  2 +-
|  NAMESPACE      |  1 +
|  NEWS           |  3 ++-
|  R/is.na10.R    | 50 ++++++++++++++++++++++++++++++++++++++++++++++++++
|  man/is.na10.Rd | 39 +++++++++++++++++++++++++++++++++++++++
|  5 files changed, 93 insertions(+), 2 deletions(-)

* 2017-01-19(Tal Galili) percentalize  -> percentize |54819b4| 
|  NAMESPACE           |  8 ++++----
|  NEWS                |  2 +-
|  R/percentize.R      | 40 ++++++++++++++++++++--------------------
|  man/normalize.Rd    | 10 +++++-----
|  man/percentalize.Rd | 44 --------------------------------------------
|  man/percentize.Rd   | 44 ++++++++++++++++++++++++++++++++++++++++++++
|  6 files changed, 74 insertions(+), 74 deletions(-)

* 2017-01-19(Tal Galili) percentalize -> percentize |fa44979| 
|  R/percentalize.R | 191 -----------------------------------------------------
|  R/percentize.R   | 191 +++++++++++++++++++++++++++++++++++++++++++++++++++++
|  2 files changed, 191 insertions(+), 191 deletions(-)

* 2017-01-19(Tal Galili) rename ept.R to percentalize.R |6786889| 
|  R/ept.R          | 191 -----------------------------------------------------
|  R/percentalize.R | 191 +++++++++++++++++++++++++++++++++++++++++++++++++++++
|  2 files changed, 191 insertions(+), 191 deletions(-)

* 2017-01-19(Tal Galili) normalize - a pre-processing function for adjusing the range of the variables to be from 0 to 1. |398ae80| 
|  NAMESPACE        |  4 +++
|  NEWS             |  2 ++
|  R/ept.R          | 82 ++++++++++++++++++++++++++++++++++++++++++++++++++++++
|  man/normalize.Rd | 42 ++++++++++++++++++++++++++++
|  4 files changed, 130 insertions(+)

* 2017-01-19(Tal Galili) rename ept to percentalize |87d93c5| 
|  NAMESPACE           |  8 ++++----
|  NEWS                |  2 +-
|  R/ept.R             | 35 +++++++++++++++++++----------------
|  man/ept.Rd          | 38 --------------------------------------
|  man/percentalize.Rd | 44 ++++++++++++++++++++++++++++++++++++++++++++
|  5 files changed, 68 insertions(+), 59 deletions(-)

* 2017-01-18(Tal Galili) Correct handeling of NA in ept.data.frame (i.e.: ept_predict) |2cc6ec5| 
|  R/ept.R | 16 ++++++++++++----
|  1 file changed, 12 insertions(+), 4 deletions(-)

* 2017-01-18(Tal Galili) Added S3 ept.matrix |11ac438| 
|  NAMESPACE  | 1 +
|  R/ept.R    | 9 ++++++++-
|  man/ept.Rd | 1 +
|  3 files changed, 10 insertions(+), 1 deletion(-)

* 2017-01-18(Tal Galili) Add the function ept - a pre-processing function for performing the Empirical Percentile Transformation on a vector or data.frame. |0843e5e| 
|  NAMESPACE  |  3 ++
|  NEWS       |  2 ++
|  R/ept.R    | 91 ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
|  man/ept.Rd | 37 ++++++++++++++++++++++++
|  4 files changed, 133 insertions(+)

* 2017-01-18(Tal Galili) Non numeric columns are now added to `row_side_colors`, making heatmaply reasonably robust to heterogeneous data.frames. |2f21251| 
|  DESCRIPTION   |  4 ++--
|  NEWS          | 10 ++++++++++
|  R/heatmaply.R | 25 +++++++++++++++++++++++++
|  3 files changed, 37 insertions(+), 2 deletions(-)

* 2016-12-25(Tal Galili) ignore TODO.txt |a62a622| 
|  .Rbuildignore | 1 +
|  .gitignore    | 1 +
|  2 files changed, 2 insertions(+)

* 2016-12-25(Tal Galili) branches_lwd - If NULL then it is ignored. |a7dbbc6| 
|  R/heatmaply.R    | 3 ++-
|  man/heatmaply.Rd | 3 ++-
|  2 files changed, 4 insertions(+), 2 deletions(-)

* 2016-11-12(Tal Galili) Update date |d1e0952| 
|  DESCRIPTION | 2 +-
|  1 file changed, 1 insertion(+), 1 deletion(-)

* 2016-11-11(Tal Galili) Import hide_colorbar from plotly. Close issue #30 |b90b2ab| 
|  NAMESPACE | 1 +
|  NEWS      | 2 +-
|  R/zzz.R   | 2 +-
|  3 files changed, 3 insertions(+), 2 deletions(-)

*   2016-11-08(Tal Galili) Merge pull request #29 from Alanocallaghan/master |60e7d02
|\  
| * 2016-11-08(Alan O'Callaghan) Revert "Fix col_side_colors tooltip bug (temporary)" |7bff61a| | 
| |  R/heatmaply.R | 21 ++++++---------------
| |  1 file changed, 6 insertions(+), 15 deletions(-)

| *   2016-11-08(Alan O'Callaghan) Merge https://github.com/talgalili/heatmaply |0c1c8f2
| |\  
| |/  
|/|   
* | 2016-11-08(Tal Galili) Allow dendrogram parameter to work again. Fix issue #28 |ce1c278| | 
| |  DESCRIPTION   | 4 ++--
| |  NEWS          | 7 +++++++
| |  R/heatmaply.R | 4 ++--
| |  3 files changed, 11 insertions(+), 4 deletions(-)

* | 2016-11-08(Tal Galili) Add dendextend functions to NAMESPACE |b736301| | 
| |  NAMESPACE    |  5 +++++
| |  R/heatmapr.R | 12 ++++++------
| |  R/zzz.R      |  2 ++
| |  3 files changed, 13 insertions(+), 6 deletions(-)

* | 2016-11-05(Tal Galili) update log files |62d3dd7| | 
| |  ChangeLog | 177 ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
| |  NEWS.md   |  14 +++++
| |  2 files changed, 191 insertions(+)

* | 2016-11-05(Tal Galili) Fix "CRAN URL not in canonical form" |d5e662b| | 
| |  README.md               | 2 +-
| |  vignettes/heatmaply.Rmd | 2 +-
| |  2 files changed, 2 insertions(+), 2 deletions(-)

* | 2016-11-05(Tal Galili) Fix "Possibly mis-spelled words in DESCRIPTION:" |4b8fdce| | 
| |  DESCRIPTION | 14 +++++++-------
| |  1 file changed, 7 insertions(+), 7 deletions(-)

* | 2016-11-05(Tal Galili) added branches_lwd - to control the width of the dendrograms' width. Fix issue #24 |de93225| | 
| |  NEWS             | 11 ++++++++---
| |  R/heatmaply.R    | 35 +++++++++++++++++++++++++++--------
| |  man/heatmaply.Rd | 10 ++++++----
| |  3 files changed, 41 insertions(+), 15 deletions(-)

* | 2016-11-05(Tal Galili) update date |5cf114f| | 
| |  DESCRIPTION | 2 +-
| |  NEWS        | 4 ++--
| |  2 files changed, 3 insertions(+), 3 deletions(-)

* | 2016-11-05(Tal Galili) Add examples for using row_side_colors  and col_side_colors |376cd70| | 
| |  vignettes/heatmaply.Rmd | 43 ++++++++++++++++++++++++++++++++++++++++++-
| |  1 file changed, 42 insertions(+), 1 deletion(-)

* | 2016-11-05(Tal Galili) Add a warning when using col_side_colors |fb3568f| | 
| |  R/heatmaply.R | 3 +++
| |  1 file changed, 3 insertions(+)

| * 2016-11-08(Alanocallaghan) Fix column dendrogram bug |11b18d5| | 
| |  R/heatmaply.R | 10 +++++++---
| |  1 file changed, 7 insertions(+), 3 deletions(-)

| * 2016-11-04(Alan O'Callaghan) Fix col_side_colors tooltip bug (temporary) |52651d6
|/  |   
|    R/heatmaply.R | 21 +++++++++++++++------
|    1 file changed, 15 insertions(+), 6 deletions(-)

* 2016-11-03(Tal Galili) Example for using row_side_colors |898528e| 
|  R/heatmaply.R    | 10 +++++++++-
|  man/heatmaply.Rd | 10 +++++++++-
|  2 files changed, 18 insertions(+), 2 deletions(-)

* 2016-11-03(Tal Galili) Added Alanocallaghan as a contributor :) |fc54e3a| 
|  DESCRIPTION | 4 +++-
|  1 file changed, 3 insertions(+), 1 deletion(-)

* 2016-11-03(Tal Galili) `RowSideColors` also works in heatmaply |0afa871| 
|  DESCRIPTION      |  2 +-
|  NEWS             |  4 ++--
|  R/heatmaply.R    | 22 ++++++++++++++++++----
|  man/heatmaply.Rd | 14 ++++++++++++++
|  4 files changed, 35 insertions(+), 7 deletions(-)

*   2016-11-03(Tal Galili) Merge pull request #26 from Alanocallaghan/master |6746c0e
|\  
| * 2016-11-03(Alan O'Callaghan) Fix s3 error |3f19372| | 
| |  R/heatmaply.R | 2 ++
| |  1 file changed, 2 insertions(+)

| * 2016-11-03(Alan O'Callaghan) Update docs |8846381| | 
| |  DESCRIPTION            | 2 +-
| |  man/heatmaply.Rd       | 6 ++++--
| |  man/side_color_plot.Rd | 7 +++++--
| |  3 files changed, 10 insertions(+), 5 deletions(-)

| * 2016-11-03(Alan O'Callaghan) bugfix heatmapr |eea1570| | 
| |  R/heatmapr.R | 2 +-
| |  1 file changed, 1 insertion(+), 1 deletion(-)

| * 2016-10-31(Alan O'Callaghan) Add Col/RowSide and suppress messages/devices |896fdd4
|/  |   
|    R/heatmaply.R | 104 +++++++++++++++++++++++++++++++++++++++---------------
|    R/heatmapr.R  |  19 ++++++++--
|    2 files changed, 93 insertions(+), 30 deletions(-)

* 2016-10-29(Tal Galili) Fix Undocumented arguments in documentation object 'side_color_plot' ‘row_text_angle’ ‘column_text_angle’ |e48ffb5| 
|  R/heatmaply.R          | 1 +
|  man/side_color_plot.Rd | 2 ++
|  2 files changed, 3 insertions(+)

* 2016-10-29(Tal Galili) limit grod_color example for a small matrx |73d1488| 
|  vignettes/heatmaply.Rmd | 4 ++--
|  1 file changed, 2 insertions(+), 2 deletions(-)

* 2016-10-29(Tal Galili) Update grid_color doc |cfa997a| 
|  R/heatmaply.R    | 3 ++-
|  man/heatmaply.Rd | 3 ++-
|  2 files changed, 4 insertions(+), 2 deletions(-)

* 2016-10-29(Tal Galili) heatmaply - grid_color now works (thanks to a hack of using geom_hline and geom_vline instead of heom_tile(..., color) in ggplot_heatmap ) |26a58c2| 
|  DESCRIPTION   | 2 +-
|  NEWS          | 4 +++-
|  R/heatmaply.R | 9 +++++++++
|  3 files changed, 13 insertions(+), 2 deletions(-)

* 2016-10-29(Tal Galili) Fix - Error in heatmaply.heatmapr(hm) :   argument "row_side_colors" is missing, with no default |a240863| 
|  R/heatmaply.R | 4 ++--
|  1 file changed, 2 insertions(+), 2 deletions(-)

* 2016-10-29(Tal Galili) Fix: Error in ggplot_heatmap(data_mat, row_text_angle, column_text_angle, scale_fill_gradient_fun,  :   object 'heatmap_layers' not found |5eeeaf3| 
|  R/heatmaply.R | 2 +-
|  1 file changed, 1 insertion(+), 1 deletion(-)

* 2016-10-29(Tal Galili) making the order of the matrix rows comparable with heatmap.2 |df58752| 
|  DESCRIPTION             |  2 +-
|  R/heatmapr.R            | 20 +++++++++++++-------
|  man/heatmapr.Rd         |  6 +++---
|  vignettes/heatmaply.Rmd | 15 +++++++++++++++
|  4 files changed, 32 insertions(+), 11 deletions(-)

* 2016-10-29(Tal Galili) ColSideColors,RowSideColors passed to row_side_colors,col_side_colors in order to keep compatibility with \link[gplots]{heatmap.2} |d8a4623| 
|  R/heatmaply.R    | 15 +++++++++++++++
|  man/heatmaply.Rd |  6 +++++-
|  2 files changed, 20 insertions(+), 1 deletion(-)

* 2016-10-29(Tal Galili) use colorspace::rainbow_hcl instead of rainbow for row_side_colors |6483997| 
|  DESCRIPTION   | 1 +
|  R/heatmaply.R | 2 +-
|  2 files changed, 2 insertions(+), 1 deletion(-)

* 2016-10-29(Tal Galili) Use margins instead of layout(margin = list(l = 130, b = 40)) |239046d| 
|  vignettes/heatmaply.Rmd | 34 +++++++++++++++++++---------------
|  1 file changed, 19 insertions(+), 15 deletions(-)

*   2016-10-29(Tal Galili) Merge pull request #25 from Alanocallaghan/master |58f9061
|\  
| * 2016-10-29(Alan O'Callaghan) Fix breaking bugs after merge with talgalili |b96683d
|/  |   
|    R/heatmaply.R | 6 ++++--
|    R/heatmapr.R  | 4 ++--
|    2 files changed, 6 insertions(+), 4 deletions(-)

* 2016-10-28(Tal Galili) updated heatmapr.Rd about row_side_colors |8dc5407| 
|  man/heatmapr.Rd | 9 +++++++--
|  1 file changed, 7 insertions(+), 2 deletions(-)

* 2016-10-28(Tal Galili) Added .Rd doc and NAMESPACE for side_color_plot |d6b15d1| 
|  NAMESPACE              |  1 +
|  man/side_color_plot.Rd | 26 ++++++++++++++++++++++++++
|  2 files changed, 27 insertions(+)

* 2016-10-28(Tal Galili) hatmap_layers to heatmap_layers + updaetd Rd |ad13091| 
|  R/heatmaply.R    | 46 +++++++++++++++++++++++-----------------------
|  man/heatmaply.Rd | 20 ++++++++++++++++----
|  2 files changed, 39 insertions(+), 27 deletions(-)

*   2016-10-28(Tal Galili) Merge pull request #23 from Alanocallaghan/master |7f8ccae
|\  
| * 2016-10-28(Alan O'Callaghan) Document added params |135cee2| | 
| |  R/heatmaply.R | 12 ++++++++++++
| |  R/heatmapr.R  |  5 +++++
| |  2 files changed, 17 insertions(+)

| * 2016-10-25(Alan O'Callaghan) Fix col_side_color issue and add checks |5a51e39| | 
| |  R/heatmaply.R | 31 +++++++++++++++++--------------
| |  1 file changed, 17 insertions(+), 14 deletions(-)

| * 2016-10-25(Alan O'Callaghan) Fix ordering bug. Simplify subplot code. Still broken |6c53455| | 
| |  R/heatmaply.R | 269 ++++++++++++++++++++----------------------------------
| |  R/heatmapr.R  |  16 +++-
| |  2 files changed, 111 insertions(+), 174 deletions(-)

| * 2016-10-23(Alan O'Callaghan) Remove unneccessary param from side_colour_plot |26d1bc4| | 
| |  R/heatmaply.R | 29 ++++++++---------------------
| |  1 file changed, 8 insertions(+), 21 deletions(-)

| * 2016-10-23(Alan O'Callaghan) Add row_side_colours and col_side_colours |1d882d1
|/  |   
|    R/heatmaply.R | 390 +++++++++++++++++++++++++++++++++++-------------------
|    1 file changed, 256 insertions(+), 134 deletions(-)

* 2016-10-19(Tal Galili) heatmaply - added a proper `margins` parameter. |577b5bf| 
|  DESCRIPTION      |  6 +++---
|  NEWS             |  7 +++++++
|  R/heatmaply.R    | 55 ++++++++++++++++++++++++++++++------------------------
|  man/heatmaply.Rd | 22 +++++++++++++---------
|  4 files changed, 54 insertions(+), 36 deletions(-)

* 2016-08-29(Tal Galili) packages that are good to have. |880a1c9| 
|  README.md | 7 +++++++
|  1 file changed, 7 insertions(+)

* 2016-08-27(Tal Galili) update |07f5790| 
|  ChangeLog | 143 ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
|  1 file changed, 143 insertions(+)

* 2016-08-27(Tal Galili) updated NEWS |bbaa50e| 
|  NEWS.md       | 79 +++++++++++++++++++++++++++++++++++++++++++++++++++++++--
|  R/heatmaply.R |  1 +
|  2 files changed, 78 insertions(+), 2 deletions(-)

* 2016-08-27(Tal Galili) fix http to https |b82febb| 
|  DESCRIPTION | 2 +-
|  1 file changed, 1 insertion(+), 1 deletion(-)

* 2016-08-04(Tal Galili) key.title - a parameter to control the main title of the color key. |f218455| 
|  NEWS             |  2 ++
|  R/heatmaply.R    | 16 ++++++++++++++--
|  man/heatmaply.Rd |  4 +++-
|  3 files changed, 19 insertions(+), 3 deletions(-)

* 2016-08-04(Tal Galili) ggheatmap - first try. (not working well enough yet. The proportions of the elements are not good) |75056b0| 
|  DESCRIPTION      |  9 +++---
|  NAMESPACE        |  1 +
|  NEWS             |  1 +
|  R/ggheatmap.R    | 85 ++++++++++++++++++++++++++++++++++++++++++++++++++++++
|  R/heatmaply.R    | 33 +++++++++++++++++----
|  man/ggheatmap.Rd | 30 +++++++++++++++++++
|  man/heatmaply.Rd |  9 ++++--
|  7 files changed, 157 insertions(+), 11 deletions(-)

* 2016-08-04(Tal Galili) Added is.heatmapr |3befb25| 
|  NAMESPACE          |  1 +
|  NEWS               |  8 ++++++++
|  R/heatmapr.R       | 13 +++++++++++++
|  man/is.heatmapr.Rd | 18 ++++++++++++++++++
|  4 files changed, 40 insertions(+)

* 2016-07-15(Tal Galili) Requires plotly (>= 3.0.0) (although it needs plotly (>= 4.0.0)) - until 4.0.0 will get to CRAN. |df68118| 
|  DESCRIPTION | 2 +-
|  1 file changed, 1 insertion(+), 1 deletion(-)

* 2016-07-15(Tal Galili) xlab, ylab - add titles to the x and y axis. |657bdf6| 
|  NEWS             |  2 +-
|  R/heatmaply.R    | 31 +++++++++++++++++++++++++------
|  man/heatmaply.Rd | 12 ++++++++----
|  3 files changed, 34 insertions(+), 11 deletions(-)

* 2016-07-15(Tal Galili) heatmaply 4.0.0 requires plotly 4.0.0 |2ec4252| 
|  DESCRIPTION | 6 +++---
|  1 file changed, 3 insertions(+), 3 deletions(-)

* 2016-07-15(Tal Galili) print is no longer needed for plotly 4.0.0 |5a8bb28| 
|  R/heatmaply.R    | 2 +-
|  man/heatmaply.Rd | 2 +-
|  2 files changed, 2 insertions(+), 2 deletions(-)

* 2016-07-15(Tal Galili) hide_colorbar - controls if the color bar should be hidden. |7a68071| 
|  NEWS             |  4 ++--
|  R/heatmaply.R    | 23 +++++++++++++++++++----
|  man/heatmaply.Rd |  6 ++++--
|  3 files changed, 25 insertions(+), 8 deletions(-)

* 2016-07-15(Tal Galili) Made titleX and titleY work (now we need to gain control over the text there...) |4f88d36| 
|  R/heatmaply.R | 14 ++++++++------
|  1 file changed, 8 insertions(+), 6 deletions(-)

* 2016-07-15(Tal Galili) srtRow, srtCol - add legacy support for these parameters (they are passed to row_text_angle and column_text_angle) (and a few more things) |c815e4b| 
|  NEWS             |  3 +++
|  R/heatmaply.R    | 39 ++++++++++++++++++++++++++++++---------
|  man/heatmaply.Rd |  9 +++++++--
|  3 files changed, 40 insertions(+), 11 deletions(-)

* 2016-06-21(Tal Galili) now works with dendextend::seriate_dendrogram |c660794| 
|  R/heatmapr.R | 6 ++----
|  1 file changed, 2 insertions(+), 4 deletions(-)

* 2016-06-13(Tal Galili) Added seriate to heatmapr - a character indicating the method of matrix sorting (default: "OLO"). This uses the seriation package. |1229bf4| 
|  DESCRIPTION             |  1 +
|  NAMESPACE               |  2 ++
|  NEWS                    | 56 ++++++++++++++++++++++++++++++++++--
|  R/heatmapr.R            | 73 ++++++++++++++++++++++++++++++++++++++++++++---
|  R/zzz.R                 |  2 ++
|  man/heatmapr.Rd         | 10 ++++++-
|  vignettes/heatmaply.Rmd | 36 +++++++++++++++++++++++
|  7 files changed, 172 insertions(+), 8 deletions(-)

* 2016-05-31(Tal Galili) typo |8000882| 
|  vignettes/heatmaply.Rmd | 2 +-
|  1 file changed, 1 insertion(+), 1 deletion(-)

* 2016-05-30(Tal Galili) update docs |07eac02| 
|  R/heatmaply.R    |  9 ++++++---
|  man/heatmaply.Rd | 18 ++++++++++++------
|  2 files changed, 18 insertions(+), 9 deletions(-)

* 2016-05-30(Tal Galili) colors can now also accept a function (and will use it to produce 256 colors) |0b454e6| 
|  NEWS                    |  1 +
|  R/heatmaply.R           | 25 ++++++++++++++-----------
|  vignettes/heatmaply.Rmd |  3 ++-
|  3 files changed, 17 insertions(+), 12 deletions(-)

* 2016-05-28(Tal Galili) hover over dendrogram now returns the height. |0ae8868| 
|  NEWS          | 1 +
|  R/heatmaply.R | 4 ++--
|  2 files changed, 3 insertions(+), 2 deletions(-)

* 2016-05-28(Tal Galili) upload a smaller gif... |ff7004d| 
|  README.md | 2 +-
|  1 file changed, 1 insertion(+), 1 deletion(-)

* 2016-05-28(Tal Galili) second attempt at resize |c6ff17a| 
|  README.md | 2 +-
|  1 file changed, 1 insertion(+), 1 deletion(-)

* 2016-05-28(Tal Galili) reduce size |116e5e3| 
|  README.md | 2 +-
|  1 file changed, 1 insertion(+), 1 deletion(-)

* 2016-05-28(Tal Galili) Screenshot demo |0b8da85| 
|  README.md | 6 ++++++
|  1 file changed, 6 insertions(+)

* 2016-05-28(Tal Galili) Use RColorBrewer for colors |1bbc15d| 
|  DESCRIPTION             |  3 ++-
|  vignettes/heatmaply.Rmd | 12 +++++++++---
|  2 files changed, 11 insertions(+), 4 deletions(-)

* 2016-05-27(Tal Galili) Use divergent color map for correlation matrix. |74b33df| 
|  vignettes/heatmaply.Rmd | 15 ++++++++++++++-
|  1 file changed, 14 insertions(+), 1 deletion(-)

* 2016-05-27(Tal Galili) grid_color - control the color of the heatmap grid. This is currently not working until this feature will be added by plotly. |7a3937b| 
|  NEWS                    |  9 +++++++++
|  R/heatmaply.R           | 51 ++++++++++++++++++++++++++++++++++++-----------
|  man/heatmaply.Rd        |  5 ++++-
|  vignettes/heatmaply.Rmd | 20 +++++++++++++++++++
|  4 files changed, 72 insertions(+), 13 deletions(-)

* 2016-05-26(Tal Galili) Move the creation of the ggplot heatmap outside |68b9c81| 
|  R/heatmaply.R | 69 +++++++++++++++++++++++++++++++++++----------------------
|  1 file changed, 43 insertions(+), 26 deletions(-)

* 2016-05-26(Tal Galili) update NEWS |4f589d3| 
|  ChangeLog | 129 ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
|  NEWS      |   6 ++-
|  NEWS.md   |  41 +++++++++++++++++--
|  3 files changed, 171 insertions(+), 5 deletions(-)

* 2016-05-26(Tal Galili) heatmaply 0.3.2 is now on CRAN! |67de297| 
|  README.md               | 12 ++++++------
|  vignettes/heatmaply.Rmd |  4 ++--
|  2 files changed, 8 insertions(+), 8 deletions(-)

* 2016-05-26(Tal Galili) Add examples for using htmlwidgets::saveWidget and plotly::subplot. (from issue #8 ) |cc2a9f9| 
|  DESCRIPTION      |  3 ++-
|  R/heatmaply.R    | 20 ++++++++++++++++++++
|  man/heatmaply.Rd | 20 ++++++++++++++++++++
|  3 files changed, 42 insertions(+), 1 deletion(-)

* 2016-05-26(Tal Galili) http -> https |883d56f| 
|  DESCRIPTION | 2 +-
|  NEWS        | 5 +++++
|  README.md   | 3 +--
|  3 files changed, 7 insertions(+), 3 deletions(-)

* 2016-05-26(Tal Galili) not on CRAN yet. |9f4b774| 
|  README.md | 2 +-
|  1 file changed, 1 insertion(+), 1 deletion(-)

* 2016-05-26(Tal Galili) heatmaply 0.3.1 - fix minor typos in DESCIPTION. |716066a| 
|  DESCRIPTION | 12 ++++++------
|  NEWS        |  5 +++++
|  2 files changed, 11 insertions(+), 6 deletions(-)

* 2016-05-25(Tal Galili) heatmaply 0.3.0 - first CRAN release! |5a0b344| 
|  NEWS                    |  8 +++-----
|  README.md               |  6 +++---
|  vignettes/heatmaply.Rmd | 17 ++++-------------
|  3 files changed, 10 insertions(+), 21 deletions(-)

* 2016-05-25(Tal Galili) Added a new Startup Message |464c02c| 
|  R/zzz.R | 88 ++++++++++++++++++---------------------------------------------
|  1 file changed, 25 insertions(+), 63 deletions(-)

* 2016-05-25(Tal Galili) Added row_text_angle and column_text_angle (with srtRow and srtCol for backward compatibility with gplots::heatmap.2). Fix #3 |bb106a4| 
|  DESCRIPTION      |  3 ++-
|  NEWS             |  5 +++--
|  R/heatmaply.R    | 52 +++++++++++++++++++++++++++++++++++++++++-----------
|  man/heatmaply.Rd | 25 +++++++++++++++++++------
|  4 files changed, 65 insertions(+), 20 deletions(-)

* 2016-05-25(Tal Galili) Add example for using layout+margin to see matrix labels. |e8cc550| 
|  R/heatmaply.R    | 4 ++++
|  man/heatmaply.Rd | 4 ++++
|  2 files changed, 8 insertions(+)

* 2016-05-25(Tal Galili) Moved "scale_fill_gradient_fun" after "..." so to fix #2 : Error: Don't know how to add scale_fill_gradient_fun to a plot |7e020ac| 
|  NEWS             |  5 +++++
|  R/heatmaply.R    | 32 ++++++++++++++++++++------------
|  man/heatmaply.Rd | 18 +++++++++---------
|  3 files changed, 34 insertions(+), 21 deletions(-)

* 2016-05-25(Tal Galili) rename the hover to row and column |9be7d2b| 
|  R/heatmaply.R | 9 +++++----
|  1 file changed, 5 insertions(+), 4 deletions(-)

* 2016-05-25(Tal Galili) Added rmarkdown to suggests |598bb5d| 
|  DESCRIPTION | 3 ++-
|  1 file changed, 2 insertions(+), 1 deletion(-)

* 2016-05-25(Tal Galili) Added knitr to suggests |6feb90b| 
|  DESCRIPTION | 2 ++
|  1 file changed, 2 insertions(+)

* 2016-05-25(Tal Galili) Add a vignette |e15b20c| 
|  DESCRIPTION             |   4 ++
|  NEWS                    |  11 +---
|  vignettes/heatmaply.Rmd | 158 ++++++++++++++++++++++++++++++++++++++++++++++
|  3 files changed, 164 insertions(+), 9 deletions(-)

* 2016-05-25(Tal Galili) no need to print in the output if plotly is in Depends |18b3897| 
|  R/heatmaply.R | 5 +++--
|  1 file changed, 3 insertions(+), 2 deletions(-)

* 2016-05-25(Tal Galili) move plotly to Depends (to reduce knitr problems) |91e6bec| 
|  DESCRIPTION | 2 +-
|  1 file changed, 1 insertion(+), 1 deletion(-)

* 2016-05-25(Tal Galili) TODO: maybe use plot_ly(z = xx, type = "heatmap") in the future. |7cd0d60| 
|  R/heatmaply.R | 29 +++++++++++++++++------------
|  1 file changed, 17 insertions(+), 12 deletions(-)

* 2016-05-25(Tal Galili) heatmaply: added the margin parameter (to control the distance between the heatmap and the dendrograms.) |93d9431| 
|  NEWS             |  6 +++++-
|  R/heatmaply.R    | 15 ++++++++++++---
|  man/heatmaply.Rd | 10 ++++++++--
|  3 files changed, 25 insertions(+), 6 deletions(-)

* 2016-05-25(Tal Galili) remove space between the heatmap and dendrograms (via: coord_cartesian(expand = FALSE)  and coord_flip(expand = FALSE)) |04d6a9f| 
|  R/heatmaply.R | 11 +++++++++--
|  1 file changed, 9 insertions(+), 2 deletions(-)

* 2016-05-25(Tal Galili) heatmaply Now works with Rowv=F and Colv=F (by introducing a new un-exported function: heatmap_subplot_from_ggplotly) |2e6517b| 
|  DESCRIPTION   |   4 +--
|  NEWS          |   7 ++++
|  R/heatmaply.R | 110 ++++++++++++++++++++++++++++++++++++++++++++++++--------
|  3 files changed, 105 insertions(+), 16 deletions(-)

* 2016-05-25(Tal Galili) scale got confused with scale_fill_gradient_fun |227749a| 
|  NEWS | 15 +++++++++++++++
|  1 file changed, 15 insertions(+)

* 2016-05-24(Tal Galili) Added the "text_angle_column" parameter to rotate column text (it is now 45 degrees by default). |c8c77cc| 
|  R/heatmaply.R    | 15 +++++++++++++--
|  man/heatmaply.Rd |  5 ++++-
|  2 files changed, 17 insertions(+), 3 deletions(-)

* 2016-05-24(Tal Galili) fix typos |f1f3dd8| 
|  DESCRIPTION | 6 +++---
|  1 file changed, 3 insertions(+), 3 deletions(-)

* 2016-05-24(Tal Galili) Use @importFrom plotly |3550233| 
|  NAMESPACE | 6 +++++-
|  NEWS      | 2 +-
|  R/zzz.R   | 6 +++++-
|  3 files changed, 11 insertions(+), 3 deletions(-)

* 2016-05-24(Tal Galili) larger titles |30d6725| 
|  NEWS    | 11 +++++------
|  NEWS.md | 11 +++++------
|  2 files changed, 10 insertions(+), 12 deletions(-)

* 2016-05-24(Tal Galili) Add NEWS.md + ChangeLog |89e2725| 
|  ChangeLog | 121 ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
|  NEWS.md   |  35 ++++++++++++++++++
|  2 files changed, 156 insertions(+)

* 2016-05-24(Tal Galili) fix various import issues that caused warnings with devtools::checks() |862ff8c| 
|  DESCRIPTION | 2 +-
|  NEWS        | 7 +++++++
|  2 files changed, 8 insertions(+), 1 deletion(-)

* 2016-05-24(Tal Galili) Import packages so to fix various CRAN warnings and errors. |9d87c65| 
|  DESCRIPTION  |  9 +++++----
|  NAMESPACE    |  6 ++++++
|  R/heatmapr.R |  8 ++------
|  R/zzz.R      | 25 +++++++++++++++++++++++++
|  4 files changed, 38 insertions(+), 10 deletions(-)

* 2016-05-23(Tal Galili) from aes to aes_string |9c87c2f| 
|  R/heatmaply.R | 4 ++--
|  1 file changed, 2 insertions(+), 2 deletions(-)

* 2016-05-23(Tal Galili) remove CONDUCT.md |ac71a3e| 
|  .Rbuildignore | 3 ++-
|  1 file changed, 2 insertions(+), 1 deletion(-)

* 2016-05-23(Tal Galili) Code for calling devtools |6886408| 
|  R/zzz.R | 289 ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
|  1 file changed, 289 insertions(+)

* 2016-05-23(Tal Galili) move magrittr and reshape2 from Depends to Imports (to remove CRAN NOTE on too many packages in Depends) |34005df| 
|  DESCRIPTION | 4 ++--
|  1 file changed, 2 insertions(+), 2 deletions(-)

* 2016-05-23(Tal Galili) Remove .travis.yml from build |1029ed9| 
|  .Rbuildignore | 1 +
|  1 file changed, 1 insertion(+)

* 2016-05-23(Tal Galili) colour to color |6462b3e| 
|  R/heatmaply.R    | 22 +++++++++++-----------
|  man/heatmaply.Rd | 14 +++++++-------
|  2 files changed, 18 insertions(+), 18 deletions(-)

* 2016-05-23(Tal Galili) Moved to 0.2.0 - new options for controlling colors and tiny bug fixes. |121ddc4| 
|  DESCRIPTION |  4 ++--
|  NEWS        | 24 ++++++++++++++++++++++++
|  2 files changed, 26 insertions(+), 2 deletions(-)

* 2016-05-23(Tal Galili) Invitation for feature requests in README |7c36615| 
|  README.md | 5 +++++
|  1 file changed, 5 insertions(+)

* 2016-05-23(Tal Galili) Better control over colors via scale_fill_gradient_fun fix #1 issue. |0b73791| 
|  R/heatmaply.R    | 42 ++++++++++++++++++++++++++++++++++++++----
|  man/heatmaply.Rd | 28 ++++++++++++++++++++++++++--
|  man/heatmapr.Rd  |  4 ++--
|  3 files changed, 66 insertions(+), 8 deletions(-)

* 2016-05-23(Tal Galili) now using "scale" will work as expected. |70d81d0| 
|  R/heatmapr.R | 4 ++--
|  1 file changed, 2 insertions(+), 2 deletions(-)

* 2016-05-23(Tal Galili) we use paste but we mean as.character |4543e64| 
|  R/heatmapr.R | 4 ++--
|  1 file changed, 2 insertions(+), 2 deletions(-)

* 2016-05-23(Tal Galili) remove axis text from dendrograms. |90de4ee| 
|  R/heatmaply.R | 16 ++++++++++++----
|  1 file changed, 12 insertions(+), 4 deletions(-)

* 2016-05-23(Tal Galili) Code to install plotly. |0d180dc| 
|  README.md | 1 +
|  1 file changed, 1 insertion(+)

* 2016-05-23(Tal Galili) Added row_dend_left parameter (it still doesn't fully work - but for now I'll keep it OFF). |c31a4f4| 
|  R/heatmaply.R | 32 ++++++++++++++++++++++++--------
|  1 file changed, 24 insertions(+), 8 deletions(-)

* 2016-05-23(Tal Galili) informative errors for mis-specified limits |87c815b| 
|  R/heatmaply.R | 8 ++++++++
|  1 file changed, 8 insertions(+)

* 2016-05-23(Tal Galili) use nrow and ncol |84791ae| 
|  R/heatmapr.R | 5 +++--
|  1 file changed, 3 insertions(+), 2 deletions(-)

* 2016-05-23(Tal Galili) Added the options: "colours" and "limits" to control the colors in the heatmap. (this may change soon to be compatible with heatmap.2 and also scale_colour_gradientn) |20638a5| 
|  R/heatmaply.R    | 37 +++++++++++++++++++++++++++++++------
|  man/heatmaply.Rd | 13 ++++++++++++-
|  2 files changed, 43 insertions(+), 7 deletions(-)

* 2016-05-23(Tal Galili) not on CRAN yet |6e83304| 
|  README.md | 2 +-
|  1 file changed, 1 insertion(+), 1 deletion(-)

* 2016-05-16(Tal Galili) The package depends on plotly 3.6.0 and above. |8ef793b| 
|  DESCRIPTION | 2 +-
|  1 file changed, 1 insertion(+), 1 deletion(-)

* 2016-05-14(Tal Galili) clear the gridlines from the dendrograms. |6c7d6ce| 
|  R/heatmaply.R | 19 ++++++++++++++++---
|  1 file changed, 16 insertions(+), 3 deletions(-)

* 2016-05-14(Tal Galili) For now, empty tooltip for the dendrograms. |3c14b9a| 
|  R/heatmaply.R | 6 ++++++
|  1 file changed, 6 insertions(+)

* 2016-05-14(Tal Galili) Fix basic NAMESPACE issue after moving to roxygen2 |3614dc9| 
|  NAMESPACE     | 3 +++
|  R/heatmaply.R | 6 +++++-
|  2 files changed, 8 insertions(+), 1 deletion(-)

* 2016-05-14(Tal Galili) First (very rough) version. It has a minimal working example, as well as MANY things to fix/tweak/adjust. |9e5fac8  
   .Rbuildignore    |   2 +
   .gitignore       |   3 +
   .travis.yml      |   9 ++
   CONDUCT.md       |  25 ++++
   DESCRIPTION      |  36 ++++++
   NAMESPACE        |  11 ++
   NEWS             |   4 +
   R/heatmaply.R    | 155 +++++++++++++++++++++++
   R/heatmapr.R     | 356 +++++++++++++++++++++++++++++++++++++++++++++++++++++
   README.md        |  91 ++++++++++++++
   heatmaply.Rproj  |  21 ++++
   man/heatmaply.Rd |  28 +++++
   man/heatmapr.Rd  | 117 ++++++++++++++++++
   13 files changed, 858 insertions(+)
