Package: hagis
Title: Analysis of Plant Pathogen Pathotype Complexities, Distributions
        and Diversity
Version: 2.0.0
Authors@R: c(
  person(given = "Austin G.", family = "McCoy", role = c("aut", "ccp"),
  email = "mccoyaus@msu.edu",
  comment = c(ORCID = "0000-0003-2483-4184")),
  person(given = "Zachary", family = "Noel", role =  c("aut", "ccp"),
  email = "noelzach@msu.edu",
  comment = c(ORCID = "0000-0001-6375-8300")),
  person(given = "Adam H.", family = "Sparks", role = c("aut", "cre"),
  email = "adam.sparks@usq.edu.au",
  comment = c(ORCID = "0000-0002-0061-8359")),
  person(given = "Martin", family = "Chilvers", role = "aut",
  email = "chilvers@msu.edu ",
  comment = c(ORCID = "0000-0001-8832-1666"))
  )
Description: Analysis of plant pathogen pathotype survey data.  Functions
  provided calculate distribution of susceptibilities, distribution of
  complexities with statistics, pathotype frequency distribution, as well as
  diversity indices for pathotypes.  This package is meant to be a direct
  replacement for Herrmann, Löwer, Schachtel's (1999)
  <doi:10.1046/j.1365-3059.1999.00325.x> Habgood-Gilmour Spreadsheet, 'HaGiS',
  previously used for pathotype analysis.
Depends: R (>= 3.2.0)
Imports: data.table, ggplot2, graphics, pander, stats, utils, vegan
License: MIT + file LICENSE
Encoding: UTF-8
LazyData: true
Suggests: covr, knitr, pkgdown, rmarkdown, testthat, vdiffr
VignetteBuilder: knitr
RoxygenNote: 6.1.1
Language: en-US
URL: https://github.com/openplantpathology/hagis,
        https://openplantpathology.github.io/hagis/
BugReports: https://github.com/openplantpathology/hagis/issues
X-schema.org-applicationCategory: Tools
X-schema.org-keywords: plant-pathology, pathotype, pathogen-survey,
        virulence analysis, differential set, assessment scale
X-schema.org-isPartOf: https://openplantpathology.org
NeedsCompilation: no
Packaged: 2019-06-22 03:09:55 UTC; adamsparks
Author: Austin G. McCoy [aut, ccp] (<https://orcid.org/0000-0003-2483-4184>),
  Zachary Noel [aut, ccp] (<https://orcid.org/0000-0001-6375-8300>),
  Adam H. Sparks [aut, cre] (<https://orcid.org/0000-0002-0061-8359>),
  Martin Chilvers [aut] (<https://orcid.org/0000-0001-8832-1666>)
Maintainer: Adam H. Sparks <adam.sparks@usq.edu.au>
Repository: CRAN
Date/Publication: 2019-06-24 11:50:03 UTC
