914b0a8c277a9b9e93e64f9ffec3f3be *DESCRIPTION
a9c0f33821355c678f51f6859306e7f5 *NAMESPACE
1ba811da465d4284e93842645b1a2584 *NEWS.md
ea10a15e3b67ca3ff44ca77ff15219a9 *R/RcppExports.R
7c778c92e5b35fa0b6c7e9c796e8f638 *R/apply_viterbi.R
ae43a8c8639875c44344994b9fe7f073 *R/check_controls.R
10e0ba8c0fdb9e48917f2be49650659e *R/check_decoding.R
42313d92d060266b6d594144d2fa5c61 *R/check_estimation.R
217153ab9d4d00a3a667414a450461b7 *R/check_saving.R
83a8cf9e3f83ecd18294e846438cbb9a *R/compute_ci.R
69ac8f6c0fecbaa0b088396c4345e567 *R/compute_fs.R
762951a80c642d0ecd9df4bcd3e75e5e *R/compute_likelihood.R
6815bbcec9a326b1881fdba1b3cc0727 *R/create_visuals.R
4eca54072078535f10f07e413295063a *R/download_data.R
e84f038422e78c2753a320c2dfc4bf42 *R/exception.R
28b5980b0a28e73d4c5467f64547d3c6 *R/fit_hmm.R
c07471c7d880bcccf4099eebe345ed14 *R/init_est.R
91977ed15b2c042ae99c263456686f49 *R/max_likelihood.R
12d182e6b24ba5d4c1c799c85c477ce7 *R/parameter_names.R
3a55c411985c5d04f874ec22711eb885 *R/parameter_transformations.R
c0604afd53fa821a0913d04f18a646ae *R/plot_ll.R
878d47fc77e224bcee4d96d49cb86e2a *R/plot_sdd.R
9837255ce2d874354673837ff6a430e1 *R/plot_ts.R
f0ff53f57c08f50f6adbb7260b13001b *R/process_data.R
f288d62e043744eb1cb3356df33f6fe5 *R/pseudo_residuals.R
83869e9db2ce370d0a8214bae67e31db *R/read_data.R
c6d0ff2e5513a10ebe049f7fe289edc5 *R/simulate_data.R
a2ac6dd76217f56f78c1cdb035d6c348 *R/zzz.R
6ca98870936f53e3cdc6926b032812bd *README.md
84375393f2fd28b5e0aa62e384f4be49 *build/vignette.rds
e8c98e39c7a9fcb4b53cb90eb37e61cc *inst/doc/data.R
43115f797bed15a64a06e4571f2c91f3 *inst/doc/data.Rmd
9def55cb5abf094e645b4905d6b08c32 *inst/doc/data.html
e8c98e39c7a9fcb4b53cb90eb37e61cc *inst/doc/debug.R
44254595a46521c03b9fca9467b154e9 *inst/doc/debug.Rmd
cc7a573bff21dbf8eb4b04e3c9238ab4 *inst/doc/debug.html
e8c98e39c7a9fcb4b53cb90eb37e61cc *inst/doc/model-parameters.R
b28fce93c0a3d04aa6c668f0fdd16c45 *inst/doc/model-parameters.Rmd
53d2bdf89967ad0ef3404665e6f08e91 *inst/doc/model-parameters.html
e8c98e39c7a9fcb4b53cb90eb37e61cc *inst/doc/output.R
7fbea980328db00e9115adbfa71303d3 *inst/doc/output.Rmd
5dce842e9163bacb4910aee638ac4ec7 *inst/doc/output.html
e8c98e39c7a9fcb4b53cb90eb37e61cc *inst/doc/specify.R
c83a6255265cbe34ea5f1714eadc1ac5 *inst/doc/specify.Rmd
3cbfd17f469dcbd525e5ea95a83b0b43 *inst/doc/specify.html
dd47d8f7c19b4eda30726accbcfd1c56 *man/Gamma2delta.Rd
f2148754f1431e1650c77f2359a32867 *man/Gamma2gammasCon.Rd
5410c510b935504fee4d5174f23e4854 *man/Gamma2gammasUncon.Rd
2bace943791e30280b0e6859532e323e *man/apply_viterbi.Rd
c01706a16720184b3156e2bcc025e1e9 *man/check_controls.Rd
8b91a3db8945b5ce49d1556c93b4e7f1 *man/check_decoding.Rd
c0d609644aa7ac4445c1f388936c8af4 *man/check_estimation.Rd
e0d1ccdfa95a4fbd9fb0b1cbcd1a260a *man/check_saving.Rd
f4bb981efd3bca029dab88887cad26ed *man/compute_ci.Rd
8cac3d522b09342b05c4ec8d51f26314 *man/compute_fs.Rd
81bcb0ef83d9e9063726a0366b89f312 *man/create_visuals.Rd
1dd274a22ecf4b953c5a1f3d63463743 *man/dfCon2dfUncon.Rd
d4a905f26858054c874529036cbb91b9 *man/dfUncon2dfCon.Rd
bde764dee9fcd0350adfdb47887da2ad *man/download_data.Rd
27e52e2da1be43aa0f52db6360cb4e6b *man/exception.Rd
fe7f13ae601b4e940ed9fa6e75902649 *man/fit_hmm.Rd
28b0d13e2e3792fcb215536b67b87516 *man/gammasCon2Gamma.Rd
4d1845c45c818927b8d5956a6b52215d *man/gammasCon2gammasUncon.Rd
f460e99448df45d1d5df41cb6364757c *man/gammasUncon2Gamma.Rd
024ba60e315c212c2b98ece46e5a1a8c *man/gammasUncon2gammasCon.Rd
af9f2ec97b76b925c825c0208e59c640 *man/init_est.Rd
44aa5d910050c5ab93832404d680eaf5 *man/max_likelihood.Rd
d6ad1d344dbddd87bd5de5c175b742e1 *man/muCon2muUncon.Rd
3a9532bedac94a81cdad7bb54e5d075c *man/muUncon2muCon.Rd
2bb460a4aa5903a56868be5b6c81ca53 *man/nLL_hhmm.Rd
93cb81f4c451cd8ac4974d7379d0ba2a *man/nLL_hmm.Rd
69f6f6d586d10bb24d20991a07761cec *man/parameter_names.Rd
4b0e234f6d8ff4a4cf26b51b427c8a8b *man/plot_ll.Rd
6d3822ae1452e38323cac1f3b7dca02f *man/plot_sdd.Rd
3449b7de294588e97d26c02cadead7a1 *man/plot_ts.Rd
acc1b3b34e56ded4729009e66423a389 *man/process_data.Rd
5b7abb8f305f0fe48b4357108d9c6d07 *man/pseudo_residuals.Rd
9b8e00fb9694e97769322011bbc6275a *man/read_data.Rd
44b0537e6e8864cca1c470b6bfe89985 *man/sigmaCon2sigmaUncon.Rd
42329216d4c8948fea9faaca14828f98 *man/sigmaUncon2sigmaCon.Rd
0dc18b6d47e917e7bd0f281160d38ae5 *man/simulate_data.Rd
4e0089a1ff6885491a0176451ed97543 *man/thetaCon2thetaList.Rd
70ce47c74ef461b6fba34bb413c2f333 *man/thetaCon2thetaUncon.Rd
68c417b44bdbddf2412b90bd6ae91d47 *man/thetaList2thetaCon.Rd
051ca39727249b80f7439f3cdf4e8791 *man/thetaList2thetaListOrdered.Rd
596a2803e69d1185d4ae8420ad8e1fe3 *man/thetaList2thetaUncon.Rd
079a5ac4d192b93bf379ba2e1c0fb40b *man/thetaUncon2thetaCon.Rd
6804d151285f658d528519483a57899e *man/thetaUncon2thetaList.Rd
408cd2f8581fac93091f5acee1c8cb18 *man/thetaUncon2thetaUnconSplit.Rd
a3ff10d5b00bb2d850a33d0aa10b0c87 *man/thetaUnconSplit2thetaList.Rd
728c0882e68f112e48f817e4a302ecb7 *src/LL_HHMM_Rcpp.cpp
3a871b93c0891786245a2d915845dd7f *src/LL_HMM_Rcpp.cpp
952d3ed70834c15378f53040bf39fe9b *src/RcppExports.cpp
43115f797bed15a64a06e4571f2c91f3 *vignettes/data.Rmd
44254595a46521c03b9fca9467b154e9 *vignettes/debug.Rmd
b28fce93c0a3d04aa6c668f0fdd16c45 *vignettes/model-parameters.Rmd
7fbea980328db00e9115adbfa71303d3 *vignettes/output.Rmd
c83a6255265cbe34ea5f1714eadc1ac5 *vignettes/specify.Rmd
