9af3828e042cfe6a72605d35db148f85 *DESCRIPTION
63b49a47010f538ed4d2848b1b8a205a *NAMESPACE
9d4e63a68bc1d4e8887fa8e68e344373 *NEWS
8cae8593e4c74f4ee2f120f3e7a2b1e9 *R/addsamptree.R
277cd7039f956645a6a66f424d9dfe70 *R/canopy.BIC.R
fe3cc4f37363fdd08640dd20b8b6580e *R/canopy.cluster.Estep.R
32fcebee9a8c54cdad2a14aff7ffdaa6 *R/canopy.cluster.Mstep.R
6763e0c61935d03534928bc6efcd7d18 *R/canopy.cluster.R
ef06399a49f849a26a804d5f997fe94a *R/canopy.output.R
32775bc5c203b4ab75a0461b7cc8b46c *R/canopy.plottree.R
336c0032f8ef66685ee0d518cf153d10 *R/canopy.post.R
eacb2e60eaf7519ac84bc2cf604f3723 *R/canopy.sample.R
739f79ad0033924e262a626ec2058b25 *R/canopy.sample.cluster.R
2fe28a37b5c6023b2e764bc999b3799b *R/canopy.sample.cluster.nocna.R
9475b6c9594521e5077b21b09e56e9df *R/canopy.sample.nocna.R
01db751ac9af27ee6847dbe2db8b9e5c *R/getCMCm.R
2380f30a9489972a937698c106b1fa0f *R/getCZ.R
1f29d9394541d1ec1f3e38c5afe1d3c3 *R/getQ.R
aac8b0e24e9219b9cc90f24fd70314d4 *R/getVAF.R
a458fd35b6e4f4608e93e0ebcc664748 *R/getZ.R
b2a20b818ac2408d25d86b8ac166864d *R/getclonalcomposition.R
18ffc2049f60d9aa91592a69be7ce812 *R/getlikelihood.R
6baa78071635713225d7b53505647ffd *R/getlikelihood.sna.R
ae8b702052714a42a0de99be5e31c0a8 *R/initialP.R
af944877c18e0498ae37c1fd6095d502 *R/initialcna.R
c1a7379c9c22ca3272714b8b44011466 *R/initialcnacopy.R
b1881ad5b65a2cbdee6333cc3d52ff01 *R/initialsna.R
9c7fe9ac2c662327b413a30f55cde8a0 *R/sampP.R
2ab7d1b2dfbf3ed95cdf444aaf36aeff *R/sampcna.R
5ec3c8edfc499792f6e523ca3b079dd0 *R/sampcnacopy.R
88b6af4f75bcf210482167697f64d54d *R/sampsna.R
b62cab491975558919d5555de7c8aa18 *R/sampsna.cluster.R
9b67ecf1ecc9d433f8d46fcaba7bef15 *R/sortcna.R
7847cf61507ad0f8d8a422295619766e *build/vignette.rds
15dfd87d7bea6db1949c029a5cdedf25 *data/AML43.rda
bf753202fb82086a89ee9d8369376c77 *data/MDA231.rda
294ec9ce4d226571485568418af88d4c *data/MDA231_sampchain.rda
7ad37011385689d6f835c4a8d73c37b7 *data/MDA231_tree.rda
7f2a7caa296df9f507f36f49e7d98fde *data/toy.rda
32011f2c552032e2bad4ccc7ed285a65 *data/toy2.rda
3b48950f567ad15b7c86ce63194169dd *data/toy3.rda
43f25ab1ffae68892899bce924378228 *inst/doc/Canopy_vignettes.R
1b24e02db9f1e2e5b4ae0e705d3cd21f *inst/doc/Canopy_vignettes.Rnw
77de41816c436d1c0b4adcfadae914ac *inst/doc/Canopy_vignettes.pdf
b072da2c753a4faa70e9b8d3ea6b4880 *man/AML43.Rd
bcae3c69193fb72312ceeca75a94e56a *man/MDA231.Rd
bbf69f010a46a86c878f669bc8cbe1e5 *man/MDA231_sampchain.Rd
9fce3b86151455f2cf1e59e995665e8b *man/MDA231_tree.Rd
e6af2fee23eea5e83a995f41be0789c7 *man/addsamptree.Rd
8632291fbb1f15908d1db0a9f5dbccbf *man/canopy.BIC.Rd
63cab7b333e4e701f2088f1f2cf38ff6 *man/canopy.cluster.Estep.Rd
5db854796c4691e7692dd7df4322ee1f *man/canopy.cluster.Mstep.Rd
010b46bc46eee094e2ce43dfe527205e *man/canopy.cluster.Rd
be486c670495f8e53974c4e60f434b13 *man/canopy.output.Rd
5a7c2e95c9c6ca199466e058fe9ed797 *man/canopy.plottree.Rd
78bb0e12a47ffc358a1ac004dfd62173 *man/canopy.post.Rd
3e2118bfc6fa9cef2789a3e1f0927dba *man/canopy.sample.Rd
b7913f9a5121b56fbeb164378b341245 *man/canopy.sample.cluster.Rd
d0b2d368a14fc6298371535ca4598138 *man/canopy.sample.cluster.nocna.Rd
5b0090923591894b788fb9b7e8fed34f *man/canopy.sample.nocna.Rd
1d08f5673438656b25b6cf8d714a578d *man/getCMCm.Rd
06ad2e93d723257e574e21714bf69b4a *man/getCZ.Rd
e961d4f1ba09ddb4cd41fba26db10e2e *man/getQ.Rd
4a85e28f167d15b10166ca5a06165795 *man/getVAF.Rd
14de406e1f81cdbd0bb413b4d2f63e73 *man/getZ.Rd
d467f1e19f6a914bbcd141855e9e975e *man/getclonalcomposition.Rd
7864643685c93d3df73f28ca6ad6cc17 *man/getlikelihood.Rd
128a35a5c7a66ea426f44594e089da98 *man/getlikelihood.sna.Rd
46dfefc9d7dc986725da379dd6543a44 *man/initialP.Rd
1eb491cc94557f38df0cd973fae0b2a4 *man/initialcna.Rd
57552e143beade3a07787fcacf73bbb8 *man/initialcnacopy.Rd
3664ed7b6cd660e9de9092837feb95b2 *man/initialsna.Rd
9fa9d6521721202792110cef861ac2f7 *man/sampP.Rd
6d6eddca02f677c662587dc367afaf66 *man/sampcna.Rd
54cf1f857968ad8e3c3afa97ec110e27 *man/sampcnacopy.Rd
e105b76053d7e0ebba6584c0e24c1209 *man/sampsna.Rd
cabf475542f9e9f9e0e7fd775605e389 *man/sampsna.cluster.Rd
ef3cbc678b6cd89f858faa306bbc16df *man/sortcna.Rd
438df88fabda4fb3b00347268ec543ec *man/toy.Rd
abe1f762ab3a9364f690e24153240a43 *man/toy2.Rd
2838b4408c0d10c06e44363f39c662ab *man/toy3.Rd
1b24e02db9f1e2e5b4ae0e705d3cd21f *vignettes/Canopy_vignettes.Rnw
