Detect Retracted References in Documents and Bibliographies

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Documentation for package ‘retraction’ version 0.1.0

• DESCRIPTION file
• User guides, package vignettes and other documentation
• Package NEWS
• Package README

Help Pages

annotate_bib	Annotate a BibTeX/BibLaTeX file, marking retracted entries.
as.data.frame.retraction_result	Coerce a retraction result to a data frame.
as_tibble.retraction_result	Coerce a retraction result to a plain tibble.
author_retractions	Retractions attributed to an author.
badge_json	Write a shields.io endpoint badge for a checked result.
check_bib	Check a BibTeX or BibLaTeX bibliography for retracted references
check_dois	Check a set of DOIs or PMIDs for retraction
check_file	Check a document or bibliography file for retracted references
check_included_studies	Check the included studies of a systematic review or meta-analysis.
check_pmc	Check the reference lists of open-access PubMed Central articles
check_preprint	Check whether a preprint has been withdrawn
check_refs	Check a data frame of references for retraction
check_zotero	Check a Zotero library for retracted references
classify_timing	Classify each citation relative to the document's date.
compare_sources	Summarize cross-source (dis)agreement in a result
evaluate_policy	Evaluate a checked result against a fail policy
explain_result	Explain the verdict for each reference in a result
export_result	Export a checked result to CSV, JSON, or Excel.
exposure_score	Retraction-exposure summary, with denominator diagnostics.
fail_policy	A fail policy shared by the CLI, GitHub Action, and knit gate.
journal_retractions	Retraction summary for a journal.
list_backends	Names of all registered backends.
manuscript_date_of	Best-effort authoring date of a manuscript file (git commit date, else mtime).
normalize_doi	Normalize a DOI.
normalize_pmcid	Normalize a PubMed Central identifier
normalize_pmid	Normalize a PubMed identifier to bare digits.
normalize_title	Normalize a title for fuzzy comparison only.
pmc_articles	Per-article open-access summary from a 'check_pmc()' result
pmc_fetch_xml	Retrieve open-access PMC full-text XML for a PMCID
primary_reason_bucket	Primary (lossy) reason bucket: the first matching bucket.
print.retraction_result	Print a retraction result.
print.retraction_review	Print a systematic-review check, leading with denominators.
reason_buckets	All matching reason buckets (multi-label).
reason_summary	Tabulate primary reason buckets across a checked result.
render_report	Render a retraction result as an HTML or Markdown report
retracted	Subset of references flagged as retracted (or otherwise notable).
retraction_addin_check_active	RStudio addin: check retractions in the active source document.
retraction_app	Launch the retraction triage Shiny app
retraction_cache_dir	Location of the retraction cache directory
retraction_clear_cache	Clear the package cache
retraction_example	Example references for demonstrating retraction checks
retraction_knit_check	Fail (or warn) a knit when the document cites retracted work.
retraction_main	CLI main: scan files and exit per a fail policy.
retraction_scan	Scan files for retracted citations.
retraction_snapshot_parquet	Export the local snapshot to a Parquet file
retraction_sync	Download or update a local snapshot of the retraction corpus
retraction_watch_diff	Report references newly flagged since the saved baseline.
retraction_watch_save	Save a checked result as a named watch baseline.
snapshot_info	Report the local snapshot's data version and freshness
suggest_alternatives	Suggest alternatives to a retracted work
summary.retraction_result	Summarize a retraction result as a status tally.