Quantifying Animal Movement and Space-Use Patterns with Statistical Physics


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Documentation for package ‘PhysMove’ version 1.2.4

Help Pages

angleList Example output from turningAngles()
angleListAll Example output from turningAngles()
calcDisp Calculate displacements
checkTracks Check data format This function checks the format of telemetry data prior to running PhysMove metrics.
communityMap Map Infomap communities
compDist Identify the best-fit distribution for data
disp Example output from calcDisp()
dispAll Example output from calcDisp()
distResultsAll Example output from fitDist()
distResultsExp Example output from fitDist() using the best-fit dmin for an exponential distribution
distResultsTrunc Example output from fitDist()
entropy Entropy of trajectories
entropyResults Example output from entropy()
fitDist Fit distributions to data
gyrationRad Gyration Radius
infomapCommunities Identify Infomap communities and create a transition probability matrix
infomapResult Example output from infomapCommunities()
occupancy Occupancy
occupancyResults Example output from occupancy()
plotAngles Plot turning angles with a circle plot
plotDispPDF Create probability density function (PDF) plots of displacements
plotDist Plot best-fit distributions to complementary cumulative distribution function (ccdf) of data
plotPDF Plot a probability density function
plotRandomTracks Plot Randomised Tracks
plotTracks Plot Tracks
predictability Predictability of trajectories
randomise Randomise tracks
randomResults Example output from randomise()
rms Root-Mean-Square of Displacements
tracks Sample location data to demonstrate PhysMove functions
tracksCRW Sample location data to demonstrate PhysMove functions
turningAngles Calculate turning angles from trajectories