Package: EcoEnsemble
Title: A General Framework for Combining Ecosystem Models
Version: 1.2.0
Authors@R: 
    c(person(given = "Michael A.",
                family = "Spence",
                role = c("aut", "cre"),
                email = "michael.spence@cefas.gov.uk",
                comment = c(ORCID = "0000-0002-3445-7979")),
            person(given = "James A.",
                family = "Martindale",
                role = c("aut"),
                comment = c(ORCID = "0000-0002-1913-5592")),
            person(given = "Michael J.",
                family = "Thomson",
                role = c("aut"),
                comment = c(ORCID = "0000-0003-0284-0129")),
            person(given = "Thomas I. J.",
                family = "Bartos",
                role = c("aut")),
            person(given = "Luke E. K.",
                family = "Broadbent",
                role = c("aut")))
Description: Fit and sample from the ensemble model described in Spence et al (2018): "A general framework for combining ecosystem models"<doi:10.1111/faf.12310>.
License: GPL (>= 3)
Encoding: UTF-8
LazyData: true
RoxygenNote: 7.3.3
Biarch: true
URL: https://github.com/CefasRepRes/EcoEnsemble
BugReports: https://github.com/CefasRepRes/EcoEnsemble/issues
Depends: R (>= 3.5.0)
Imports: methods, Rcpp, matrixcalc, RcppParallel (>= 5.0.1), rstan (>=
        2.26.0), rstantools (>= 2.1.1), dplyr, ggplot2, reshape2,
        tibble, cowplot, posterior
LinkingTo: BH (>= 1.66.0), Rcpp, RcppEigen (>= 0.3.3.3.0), RcppParallel
        (>= 5.0.1), rstan (>= 2.26.0), StanHeaders (>= 2.26.0)
SystemRequirements: GNU make
Suggests: rmarkdown, kableExtra, knitr, testthat (>= 3.0.0), mgcv
Config/testthat/edition: 3
VignetteBuilder: knitr
Collate: 'DiscrepancyPrior-IndLTPrior-class.R'
        'DiscrepancyPrior-IndSTPrior-class.R'
        'DiscrepancyPrior-ShaSTPrior-class.R'
        'DiscrepancyPrior-TruthPrior-class.R' 'EcoEnsemble-package.R'
        'EnsemblePrior-class.R' 'EnsembleData-class.R'
        'EnsembleFit-class.R' 'EnsembleSample-class.R'
        'Prior_sampling.R' 'RcppExports.R' 'data.R' 'fit_ensemble.R'
        'fit_ensemble_withdrivers.R' 'generate_simulator_stan_data.R'
        'generate_simulator_stan_data_withdrivers.R'
        'get_samples_array.R' 'get_stan_outputs.R'
        'get_stan_outputs_withdrivers.R' 'plot_functions.R'
        'plot_functions_withdrivers.R' 'prior_functions.R'
        'stan_sampling_utils.R' 'stanmodels.R' 'validation_functions.R'
        'validation_functions_withdrivers.R'
        'validation_prior_functions.R'
NeedsCompilation: yes
Packaged: 2026-04-27 15:18:32 UTC; LB19
Author: Michael A. Spence [aut, cre] (ORCID:
    <https://orcid.org/0000-0002-3445-7979>),
  James A. Martindale [aut] (ORCID:
    <https://orcid.org/0000-0002-1913-5592>),
  Michael J. Thomson [aut] (ORCID:
    <https://orcid.org/0000-0003-0284-0129>),
  Thomas I. J. Bartos [aut],
  Luke E. K. Broadbent [aut]
Maintainer: Michael A. Spence <michael.spence@cefas.gov.uk>
Repository: CRAN
Date/Publication: 2026-04-27 17:00:02 UTC
Built: R 4.5.3; x86_64-w64-mingw32; 2026-05-28 12:23:23 UTC; windows
Archs: x64
